Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0639 and Psest_0640 are separated by 116 nucleotides Psest_0640 and Psest_0641 are separated by 267 nucleotides Psest_0641 and Psest_0642 are separated by 109 nucleotides Psest_0642 and Psest_0643 overlap by 4 nucleotides
Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565
_0639
Psest_0640: Psest_0640 - Uncharacterized conserved protein, at 694,682 to 695,158
_0640
Psest_0641: Psest_0641 - 1-deoxy-D-xylulose-5-phosphate synthase, at 695,426 to 697,324
_0641
Psest_0642: Psest_0642 - Geranylgeranyl pyrophosphate synthase, at 697,434 to 698,324
_0642
Psest_0643: Psest_0643 - exodeoxyribonuclease VII, small subunit, at 698,321 to 698,563
_0643
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -2
-1
0
1
2 at 694.525 kb on + strand at 694.525 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.722 kb on - strand at 694.722 kb on - strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640 at 694.811 kb on + strand, within Psest_0640 at 694.811 kb on + strand, within Psest_0640 at 694.811 kb on + strand, within Psest_0640 at 694.812 kb on - strand, within Psest_0640 at 694.812 kb on - strand, within Psest_0640 at 694.817 kb on + strand, within Psest_0640 at 694.817 kb on + strand, within Psest_0640 at 694.901 kb on + strand, within Psest_0640 at 694.901 kb on + strand, within Psest_0640 at 694.901 kb on + strand, within Psest_0640 at 694.902 kb on - strand, within Psest_0640 at 694.902 kb on - strand, within Psest_0640 at 695.120 kb on + strand at 695.120 kb on + strand at 695.219 kb on + strand at 695.219 kb on + strand at 695.219 kb on + strand at 695.219 kb on + strand at 695.220 kb on - strand at 695.220 kb on - strand at 695.300 kb on + strand at 695.301 kb on - strand at 695.301 kb on - strand at 695.301 kb on - strand at 695.302 kb on + strand at 695.302 kb on + strand at 695.303 kb on - strand at 695.303 kb on - strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.389 kb on - strand at 695.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 694,525 + +0.0 694,525 + -1.0 694,721 + -1.3 694,721 + +0.4 694,721 + +0.4 694,721 + +0.5 694,721 + +1.6 694,722 - -1.8 694,722 - -1.0 694,724 + +0.7 694,724 + -0.6 694,724 + -0.8 694,724 + +0.0 694,725 - -1.3 694,725 - +0.0 694,725 - -0.6 694,760 + Psest_0640 0.16 +1.4 694,760 + Psest_0640 0.16 -0.8 694,760 + Psest_0640 0.16 +0.0 694,811 + Psest_0640 0.27 -0.4 694,811 + Psest_0640 0.27 +0.4 694,811 + Psest_0640 0.27 +1.0 694,812 - Psest_0640 0.27 +0.0 694,812 - Psest_0640 0.27 +0.0 694,817 + Psest_0640 0.28 -0.6 694,817 + Psest_0640 0.28 +1.0 694,901 + Psest_0640 0.46 +0.5 694,901 + Psest_0640 0.46 -0.3 694,901 + Psest_0640 0.46 +2.0 694,902 - Psest_0640 0.46 +0.1 694,902 - Psest_0640 0.46 +1.0 695,120 + +0.4 695,120 + +0.0 695,219 + +0.0 695,219 + +1.0 695,219 + +0.4 695,219 + -1.0 695,220 - -1.3 695,220 - -1.1 695,300 + +2.4 695,301 - -1.0 695,301 - -0.2 695,301 - +0.0 695,302 + -1.9 695,302 + +0.5 695,303 - -0.6 695,303 - +0.0 695,350 + +2.0 695,350 + -0.6 695,350 + +1.0 695,350 + +0.4 695,350 + -1.0 695,389 - +0.0 695,389 - +0.3
Or see this region's nucleotide sequence