Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0493

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0492 and Psest_0493 are separated by 153 nucleotidesPsest_0493 and Psest_0494 are separated by 11 nucleotidesPsest_0494 and Psest_0495 are separated by 47 nucleotides Psest_0492: Psest_0492 - hypothetical protein, at 545,628 to 547,469 _0492 Psest_0493: Psest_0493 - phosphatidylserine decarboxylase precursor, at 547,623 to 548,522 _0493 Psest_0494: Psest_0494 - Rhodanese-related sulfurtransferase, at 548,534 to 549,349 _0494 Psest_0495: Psest_0495 - HDOD domain., at 549,397 to 550,911 _0495 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.998 kb on - strand, within Psest_0492at 547.021 kb on - strand, within Psest_0492at 547.038 kb on + strand, within Psest_0492at 547.121 kb on - strand, within Psest_0492at 547.193 kb on + strand, within Psest_0492at 547.207 kb on + strand, within Psest_0492at 547.207 kb on + strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.294 kb on - strandat 547.322 kb on - strandat 547.322 kb on - strandat 547.463 kb on + strandat 547.500 kb on + strandat 547.500 kb on + strandat 547.500 kb on + strandat 547.500 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.517 kb on + strandat 547.518 kb on - strandat 547.518 kb on - strandat 547.523 kb on + strandat 547.524 kb on - strandat 547.563 kb on + strandat 548.589 kb on + strandat 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.736 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 549.091 kb on - strand, within Psest_0494at 549.091 kb on - strand, within Psest_0494at 549.091 kb on - strand, within Psest_0494at 549.100 kb on - strand, within Psest_0494at 549.100 kb on - strand, within Psest_0494at 549.100 kb on - strand, within Psest_0494at 549.370 kb on - strandat 549.370 kb on - strandat 549.370 kb on - strandat 549.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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546,862 + Psest_0492 0.67 +0.3
546,862 + Psest_0492 0.67 +0.5
546,862 + Psest_0492 0.67 +0.8
546,862 + Psest_0492 0.67 +0.5
546,862 + Psest_0492 0.67 +2.0
546,863 - Psest_0492 0.67 -0.2
546,863 - Psest_0492 0.67 -2.4
546,863 - Psest_0492 0.67 -0.7
546,863 - Psest_0492 0.67 +1.3
546,997 + Psest_0492 0.74 -0.8
546,997 + Psest_0492 0.74 -0.4
546,997 + Psest_0492 0.74 +0.0
546,997 + Psest_0492 0.74 -1.3
546,998 - Psest_0492 0.74 +0.1
547,021 - Psest_0492 0.76 +1.8
547,038 + Psest_0492 0.77 -0.7
547,121 - Psest_0492 0.81 +0.1
547,193 + Psest_0492 0.85 -1.7
547,207 + Psest_0492 0.86 +0.2
547,207 + Psest_0492 0.86 +0.8
547,208 - Psest_0492 0.86 +0.1
547,208 - Psest_0492 0.86 +0.7
547,208 - Psest_0492 0.86 -0.5
547,208 - Psest_0492 0.86 +0.3
547,208 - Psest_0492 0.86 +1.5
547,294 - -0.8
547,322 - -0.1
547,322 - -0.1
547,463 + +0.5
547,500 + +0.7
547,500 + -0.7
547,500 + -1.1
547,500 + -1.7
547,504 + -1.5
547,504 + -2.9
547,504 + +0.6
547,504 + -0.4
547,505 - -1.5
547,505 - +0.7
547,505 - +0.5
547,505 - -0.7
547,505 - +0.6
547,517 + -0.6
547,518 - -0.6
547,518 - -0.3
547,523 + +0.9
547,524 - -0.5
547,563 + -1.3
548,589 + -0.5
548,632 - Psest_0494 0.12 -1.0
548,632 - Psest_0494 0.12 +0.3
548,632 - Psest_0494 0.12 +0.3
548,632 - Psest_0494 0.12 +0.2
548,632 - Psest_0494 0.12 +0.0
548,736 - Psest_0494 0.25 -1.4
548,893 - Psest_0494 0.44 -0.7
548,893 - Psest_0494 0.44 +0.4
548,893 - Psest_0494 0.44 -1.8
548,893 - Psest_0494 0.44 +0.1
548,893 - Psest_0494 0.44 -0.1
548,893 - Psest_0494 0.44 +0.7
548,893 - Psest_0494 0.44 +0.4
548,893 - Psest_0494 0.44 +1.8
548,893 - Psest_0494 0.44 -0.4
548,893 - Psest_0494 0.44 -3.0
548,893 - Psest_0494 0.44 +0.7
548,893 - Psest_0494 0.44 +1.2
548,893 - Psest_0494 0.44 +1.1
548,893 - Psest_0494 0.44 -0.8
548,893 - Psest_0494 0.44 -0.3
548,893 - Psest_0494 0.44 +1.0
548,893 - Psest_0494 0.44 +0.7
549,091 - Psest_0494 0.68 -0.2
549,091 - Psest_0494 0.68 +0.3
549,091 - Psest_0494 0.68 -0.4
549,100 - Psest_0494 0.69 -0.8
549,100 - Psest_0494 0.69 -0.8
549,100 - Psest_0494 0.69 -1.0
549,370 - +1.0
549,370 - -0.0
549,370 - -1.2
549,370 - -0.3

Or see this region's nucleotide sequence