Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0465 and Psest_0466 are separated by 71 nucleotides Psest_0466 and Psest_0467 are separated by 34 nucleotides Psest_0467 and Psest_0468 overlap by 1 nucleotides Psest_0468 and Psest_0469 are separated by 3 nucleotides
Psest_0465: Psest_0465 - Acetyltransferase (isoleucine patch superfamily), at 512,893 to 513,597
_0465
Psest_0466: Psest_0466 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 513,669 to 514,301
_0466
Psest_0467: Psest_0467 - lipid A export permease/ATP-binding protein MsbA, at 514,336 to 516,153
_0467
Psest_0468: Psest_0468 - Mig-14., at 516,153 to 517,049
_0468
Psest_0469: Psest_0469 - Uncharacterized proteins, LmbE homologs, at 517,053 to 518,447
_0469
Position (kb) 514
515
516
517 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 513.339 kb on + strand, within Psest_0465 at 513.340 kb on - strand, within Psest_0465 at 513.342 kb on + strand, within Psest_0465 at 513.350 kb on + strand, within Psest_0465 at 513.351 kb on - strand, within Psest_0465 at 513.351 kb on - strand, within Psest_0465 at 513.351 kb on - strand, within Psest_0465 at 513.358 kb on + strand, within Psest_0465 at 513.394 kb on - strand, within Psest_0465 at 513.477 kb on + strand, within Psest_0465 at 513.511 kb on + strand, within Psest_0465 at 513.513 kb on + strand, within Psest_0465 at 513.553 kb on + strand at 513.555 kb on + strand at 513.615 kb on - strand at 513.873 kb on + strand, within Psest_0466 at 513.960 kb on + strand, within Psest_0466 at 513.960 kb on + strand, within Psest_0466 at 513.993 kb on + strand, within Psest_0466 at 513.993 kb on + strand, within Psest_0466 at 514.023 kb on + strand, within Psest_0466 at 514.027 kb on + strand, within Psest_0466 at 514.027 kb on + strand, within Psest_0466 at 514.027 kb on + strand, within Psest_0466 at 514.185 kb on + strand, within Psest_0466 at 514.185 kb on + strand, within Psest_0466 at 514.185 kb on + strand, within Psest_0466 at 514.248 kb on + strand at 514.275 kb on + strand at 514.290 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 513,339 + Psest_0465 0.63 -0.9 513,340 - Psest_0465 0.63 -1.5 513,342 + Psest_0465 0.64 -0.7 513,350 + Psest_0465 0.65 -1.8 513,351 - Psest_0465 0.65 +0.2 513,351 - Psest_0465 0.65 -2.3 513,351 - Psest_0465 0.65 -2.9 513,358 + Psest_0465 0.66 -2.9 513,394 - Psest_0465 0.71 +0.1 513,477 + Psest_0465 0.83 -0.3 513,511 + Psest_0465 0.88 -2.5 513,513 + Psest_0465 0.88 +0.9 513,553 + -1.9 513,555 + -1.6 513,615 - -0.2 513,873 + Psest_0466 0.32 -3.0 513,960 + Psest_0466 0.46 -1.3 513,960 + Psest_0466 0.46 -2.5 513,993 + Psest_0466 0.51 +0.1 513,993 + Psest_0466 0.51 -1.5 514,023 + Psest_0466 0.56 -4.2 514,027 + Psest_0466 0.57 -0.5 514,027 + Psest_0466 0.57 -1.7 514,027 + Psest_0466 0.57 -3.7 514,185 + Psest_0466 0.82 -1.7 514,185 + Psest_0466 0.82 -1.3 514,185 + Psest_0466 0.82 -2.7 514,248 + -1.3 514,275 + -1.7 514,290 + -1.3
Or see this region's nucleotide sequence