Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0445 and Psest_0446 are separated by 110 nucleotides Psest_0446 and Psest_0447 are separated by 108 nucleotides
Psest_0445: Psest_0445 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 484,818 to 487,490
_0445
Psest_0446: Psest_0446 - hypothetical protein, at 487,601 to 488,128
_0446
Psest_0447: Psest_0447 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 488,237 to 490,240
_0447
Position (kb) 487
488
489 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 486.802 kb on + strand, within Psest_0445 at 486.802 kb on + strand, within Psest_0445 at 486.802 kb on + strand, within Psest_0445 at 486.802 kb on + strand, within Psest_0445 at 486.802 kb on + strand, within Psest_0445 at 486.803 kb on - strand, within Psest_0445 at 486.803 kb on - strand, within Psest_0445 at 486.886 kb on + strand, within Psest_0445 at 486.886 kb on + strand, within Psest_0445 at 486.886 kb on + strand, within Psest_0445 at 486.886 kb on + strand, within Psest_0445 at 486.989 kb on + strand, within Psest_0445 at 486.989 kb on + strand, within Psest_0445 at 486.989 kb on + strand, within Psest_0445 at 486.989 kb on + strand, within Psest_0445 at 486.989 kb on + strand, within Psest_0445 at 487.118 kb on - strand, within Psest_0445 at 487.141 kb on + strand, within Psest_0445 at 487.248 kb on - strand at 487.479 kb on - strand at 487.482 kb on + strand at 487.482 kb on + strand at 487.482 kb on + strand at 487.483 kb on - strand at 487.483 kb on - strand at 487.483 kb on - strand at 487.510 kb on - strand at 487.510 kb on - strand at 487.510 kb on - strand at 487.571 kb on - strand at 487.575 kb on - strand at 487.581 kb on - strand at 487.635 kb on + strand at 487.636 kb on - strand at 487.721 kb on + strand, within Psest_0446 at 487.721 kb on + strand, within Psest_0446 at 487.722 kb on - strand, within Psest_0446 at 487.722 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.746 kb on - strand, within Psest_0446 at 487.789 kb on + strand, within Psest_0446 at 487.789 kb on + strand, within Psest_0446 at 487.790 kb on - strand, within Psest_0446 at 487.790 kb on - strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.805 kb on + strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.806 kb on - strand, within Psest_0446 at 487.824 kb on - strand, within Psest_0446 at 487.974 kb on - strand, within Psest_0446 at 487.983 kb on - strand, within Psest_0446 at 488.005 kb on + strand, within Psest_0446 at 488.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 486,802 + Psest_0445 0.74 -1.6 486,802 + Psest_0445 0.74 -0.9 486,802 + Psest_0445 0.74 -1.5 486,802 + Psest_0445 0.74 -0.5 486,802 + Psest_0445 0.74 -1.9 486,803 - Psest_0445 0.74 -1.7 486,803 - Psest_0445 0.74 +2.1 486,886 + Psest_0445 0.77 -1.7 486,886 + Psest_0445 0.77 -2.2 486,886 + Psest_0445 0.77 -3.8 486,886 + Psest_0445 0.77 -1.9 486,989 + Psest_0445 0.81 -3.6 486,989 + Psest_0445 0.81 -1.7 486,989 + Psest_0445 0.81 -1.5 486,989 + Psest_0445 0.81 -3.5 486,989 + Psest_0445 0.81 -1.3 487,118 - Psest_0445 0.86 -0.3 487,141 + Psest_0445 0.87 -1.9 487,248 - -2.9 487,479 - -3.1 487,482 + -0.4 487,482 + -1.5 487,482 + -0.5 487,483 - -1.1 487,483 - -4.1 487,483 - -1.9 487,510 - +2.0 487,510 - +2.7 487,510 - +1.7 487,571 - +1.2 487,575 - +1.9 487,581 - +1.7 487,635 + -1.3 487,636 - +2.6 487,721 + Psest_0446 0.23 +0.9 487,721 + Psest_0446 0.23 -0.5 487,722 - Psest_0446 0.23 +3.0 487,722 - Psest_0446 0.23 +2.5 487,746 - Psest_0446 0.27 +2.2 487,746 - Psest_0446 0.27 +1.4 487,746 - Psest_0446 0.27 +1.9 487,746 - Psest_0446 0.27 +1.9 487,789 + Psest_0446 0.36 -2.3 487,789 + Psest_0446 0.36 +0.3 487,790 - Psest_0446 0.36 +2.0 487,790 - Psest_0446 0.36 +1.3 487,805 + Psest_0446 0.39 +0.1 487,805 + Psest_0446 0.39 -0.0 487,805 + Psest_0446 0.39 -1.2 487,805 + Psest_0446 0.39 -0.9 487,805 + Psest_0446 0.39 +0.4 487,805 + Psest_0446 0.39 -1.3 487,805 + Psest_0446 0.39 -0.4 487,805 + Psest_0446 0.39 +0.4 487,806 - Psest_0446 0.39 +1.5 487,806 - Psest_0446 0.39 +1.6 487,806 - Psest_0446 0.39 +1.2 487,806 - Psest_0446 0.39 +1.3 487,806 - Psest_0446 0.39 +2.4 487,806 - Psest_0446 0.39 +2.8 487,806 - Psest_0446 0.39 +1.3 487,806 - Psest_0446 0.39 +1.8 487,824 - Psest_0446 0.42 +1.3 487,974 - Psest_0446 0.71 +1.7 487,983 - Psest_0446 0.72 -0.9 488,005 + Psest_0446 0.77 +1.1 488,252 - +1.4
Or see this region's nucleotide sequence