Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0442

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0441 and Psest_0442 are separated by 25 nucleotidesPsest_0442 and Psest_0443 are separated by 432 nucleotides Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166 _0441 Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178 _0442 Psest_0443: Psest_0443 - methionine-S-sulfoxide reductase, at 483,611 to 484,156 _0443 Position (kb) 482 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 481.249 kb on + strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.426 kb on + strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.438 kb on + strand, within Psest_0441at 481.528 kb on + strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.563 kb on - strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.645 kb on + strand, within Psest_0441at 481.669 kb on + strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.825 kb on - strand, within Psest_0441at 481.982 kb on + strandat 481.992 kb on + strandat 481.993 kb on - strandat 481.993 kb on - strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.042 kb on + strandat 482.042 kb on + strandat 482.157 kb on - strandat 482.291 kb on + strand, within Psest_0442at 482.291 kb on + strand, within Psest_0442at 482.293 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.821 kb on + strand, within Psest_0442at 482.864 kb on + strand, within Psest_0442at 482.873 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.091 kb on + strandat 483.215 kb on + strandat 483.215 kb on + strandat 483.402 kb on - strandat 483.506 kb on + strandat 483.528 kb on + strandat 483.529 kb on - strandat 483.694 kb on + strand, within Psest_0443at 483.764 kb on + strand, within Psest_0443at 483.816 kb on - strand, within Psest_0443at 483.837 kb on - strand, within Psest_0443at 483.906 kb on - strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.020 kb on - strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.022 kb on - strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.030 kb on - strand, within Psest_0443at 484.059 kb on + strand, within Psest_0443at 484.136 kb on + strandat 484.169 kb on - strandat 484.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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481,249 + Psest_0441 0.62 -0.5
481,250 - Psest_0441 0.62 +1.1
481,250 - Psest_0441 0.62 -0.9
481,250 - Psest_0441 0.62 +0.4
481,259 + Psest_0441 0.63 -1.3
481,259 + Psest_0441 0.63 -0.2
481,284 + Psest_0441 0.64 -1.9
481,284 + Psest_0441 0.64 +1.1
481,284 + Psest_0441 0.64 -0.7
481,285 - Psest_0441 0.64 +0.3
481,285 - Psest_0441 0.64 +2.1
481,285 - Psest_0441 0.64 +0.6
481,426 + Psest_0441 0.70 -0.7
481,427 - Psest_0441 0.70 +0.9
481,427 - Psest_0441 0.70 +0.3
481,427 - Psest_0441 0.70 +1.1
481,438 + Psest_0441 0.70 -2.1
481,528 + Psest_0441 0.74 -2.4
481,529 - Psest_0441 0.74 -0.2
481,529 - Psest_0441 0.74 -0.2
481,529 - Psest_0441 0.74 +0.3
481,529 - Psest_0441 0.74 +0.5
481,529 - Psest_0441 0.74 -0.4
481,563 - Psest_0441 0.75 -0.9
481,602 + Psest_0441 0.77 -0.5
481,602 + Psest_0441 0.77 -0.1
481,602 + Psest_0441 0.77 -0.8
481,602 + Psest_0441 0.77 -2.7
481,603 - Psest_0441 0.77 +0.5
481,603 - Psest_0441 0.77 -0.3
481,603 - Psest_0441 0.77 +0.5
481,645 + Psest_0441 0.79 -1.8
481,669 + Psest_0441 0.80 +0.5
481,670 - Psest_0441 0.80 +1.1
481,670 - Psest_0441 0.80 -0.1
481,673 + Psest_0441 0.80 -0.0
481,673 + Psest_0441 0.80 +0.6
481,673 + Psest_0441 0.80 -1.6
481,673 + Psest_0441 0.80 -2.1
481,673 + Psest_0441 0.80 +1.1
481,673 + Psest_0441 0.80 -1.9
481,673 + Psest_0441 0.80 -1.2
481,674 - Psest_0441 0.80 -0.2
481,674 - Psest_0441 0.80 -0.1
481,674 - Psest_0441 0.80 -1.6
481,674 - Psest_0441 0.80 +0.1
481,674 - Psest_0441 0.80 +0.6
481,684 + Psest_0441 0.80 +0.2
481,684 + Psest_0441 0.80 +0.1
481,684 + Psest_0441 0.80 +0.1
481,805 + Psest_0441 0.85 +1.2
481,805 + Psest_0441 0.85 -1.5
481,805 + Psest_0441 0.85 +0.1
481,805 + Psest_0441 0.85 -0.5
481,806 - Psest_0441 0.85 +0.5
481,806 - Psest_0441 0.85 -0.1
481,806 - Psest_0441 0.85 -1.3
481,806 - Psest_0441 0.85 -0.7
481,806 - Psest_0441 0.85 +0.1
481,825 - Psest_0441 0.86 +0.2
481,982 + +0.3
481,992 + +0.8
481,993 - -1.5
481,993 - -0.7
482,034 + -1.1
482,034 + -1.0
482,034 + +1.1
482,042 + +0.8
482,042 + -0.3
482,157 - -3.0
482,291 + Psest_0442 0.10 +1.1
482,291 + Psest_0442 0.10 -1.5
482,293 + Psest_0442 0.10 -1.3
482,552 + Psest_0442 0.36 -2.3
482,552 + Psest_0442 0.36 -1.3
482,753 + Psest_0442 0.57 -0.5
482,753 + Psest_0442 0.57 -3.3
482,821 + Psest_0442 0.64 -1.9
482,864 + Psest_0442 0.68 -1.5
482,873 + Psest_0442 0.69 -1.5
482,923 + Psest_0442 0.74 +0.1
482,923 + Psest_0442 0.74 -2.1
482,923 + Psest_0442 0.74 -0.9
482,923 + Psest_0442 0.74 -2.3
482,933 + Psest_0442 0.75 -2.3
482,933 + Psest_0442 0.75 -0.9
482,933 + Psest_0442 0.75 -2.3
482,933 + Psest_0442 0.75 -1.5
482,933 + Psest_0442 0.75 -1.3
482,979 + Psest_0442 0.80 -0.9
482,979 + Psest_0442 0.80 -2.1
482,998 + Psest_0442 0.82 +1.1
482,998 + Psest_0442 0.82 +1.1
483,001 + Psest_0442 0.82 -2.4
483,001 + Psest_0442 0.82 -1.5
483,091 + +0.8
483,215 + +0.3
483,215 + -0.9
483,402 - -0.5
483,506 + -1.9
483,528 + -0.1
483,529 - +0.1
483,694 + Psest_0443 0.15 -1.1
483,764 + Psest_0443 0.28 +0.9
483,816 - Psest_0443 0.38 +0.9
483,837 - Psest_0443 0.41 -0.8
483,906 - Psest_0443 0.54 -0.7
484,019 + Psest_0443 0.75 -1.0
484,019 + Psest_0443 0.75 -0.3
484,019 + Psest_0443 0.75 -0.5
484,019 + Psest_0443 0.75 +0.1
484,019 + Psest_0443 0.75 +0.2
484,019 + Psest_0443 0.75 -1.4
484,019 + Psest_0443 0.75 -1.1
484,019 + Psest_0443 0.75 +0.7
484,020 - Psest_0443 0.75 +1.5
484,021 + Psest_0443 0.75 -0.9
484,021 + Psest_0443 0.75 +0.3
484,021 + Psest_0443 0.75 -0.1
484,021 + Psest_0443 0.75 -0.9
484,022 - Psest_0443 0.75 -0.9
484,029 + Psest_0443 0.77 -1.3
484,029 + Psest_0443 0.77 -0.5
484,029 + Psest_0443 0.77 -0.8
484,029 + Psest_0443 0.77 -1.6
484,029 + Psest_0443 0.77 -1.7
484,029 + Psest_0443 0.77 -1.8
484,029 + Psest_0443 0.77 -1.1
484,029 + Psest_0443 0.77 -0.7
484,029 + Psest_0443 0.77 +0.1
484,030 - Psest_0443 0.77 -0.7
484,059 + Psest_0443 0.82 +0.9
484,136 + +0.8
484,169 - -0.3
484,169 - +1.4

Or see this region's nucleotide sequence