Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0438 and Psest_0439 overlap by 1 nucleotides Psest_0439 and Psest_0440 are separated by 188 nucleotides Psest_0440 and Psest_0441 are separated by 178 nucleotides
Psest_0438: Psest_0438 - NACHT domain., at 473,192 to 477,613
_0438
Psest_0439: Psest_0439 - hypothetical protein, at 477,613 to 479,055
_0439
Psest_0440: Psest_0440 - hypothetical protein, at 479,244 to 479,558
_0440
Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166
_0441
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 476.654 kb on + strand, within Psest_0438 at 476.655 kb on - strand, within Psest_0438 at 476.741 kb on + strand, within Psest_0438 at 476.741 kb on + strand, within Psest_0438 at 476.741 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.754 kb on + strand, within Psest_0438 at 476.755 kb on - strand, within Psest_0438 at 476.755 kb on - strand, within Psest_0438 at 476.755 kb on - strand, within Psest_0438 at 476.755 kb on - strand, within Psest_0438 at 476.755 kb on - strand, within Psest_0438 at 476.755 kb on - strand, within Psest_0438 at 476.798 kb on + strand, within Psest_0438 at 476.798 kb on + strand, within Psest_0438 at 476.798 kb on + strand, within Psest_0438 at 476.798 kb on + strand, within Psest_0438 at 476.799 kb on - strand, within Psest_0438 at 476.799 kb on - strand, within Psest_0438 at 476.799 kb on - strand, within Psest_0438 at 476.856 kb on + strand, within Psest_0438 at 476.856 kb on + strand, within Psest_0438 at 476.856 kb on + strand, within Psest_0438 at 476.856 kb on + strand, within Psest_0438 at 476.856 kb on + strand, within Psest_0438 at 476.856 kb on + strand, within Psest_0438 at 476.857 kb on - strand, within Psest_0438 at 476.857 kb on - strand, within Psest_0438 at 476.857 kb on - strand, within Psest_0438 at 476.857 kb on - strand, within Psest_0438 at 476.857 kb on - strand, within Psest_0438 at 476.857 kb on - strand, within Psest_0438 at 476.884 kb on + strand, within Psest_0438 at 476.885 kb on - strand, within Psest_0438 at 476.902 kb on + strand, within Psest_0438 at 476.981 kb on + strand, within Psest_0438 at 476.992 kb on + strand, within Psest_0438 at 476.993 kb on - strand, within Psest_0438 at 476.993 kb on - strand, within Psest_0438 at 476.996 kb on - strand, within Psest_0438 at 477.011 kb on + strand, within Psest_0438 at 477.011 kb on + strand, within Psest_0438 at 477.011 kb on + strand, within Psest_0438 at 477.012 kb on - strand, within Psest_0438 at 477.024 kb on + strand, within Psest_0438 at 477.024 kb on + strand, within Psest_0438 at 477.024 kb on + strand, within Psest_0438 at 477.114 kb on - strand, within Psest_0438 at 477.127 kb on + strand, within Psest_0438 at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.247 kb on - strand at 477.247 kb on - strand at 477.247 kb on - strand at 477.247 kb on - strand at 477.247 kb on - strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.272 kb on + strand at 477.273 kb on - strand at 477.273 kb on - strand at 477.289 kb on + strand at 477.354 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.407 kb on + strand at 477.408 kb on - strand at 477.408 kb on - strand at 477.457 kb on + strand at 477.458 kb on - strand at 477.464 kb on + strand at 477.464 kb on + strand at 477.464 kb on + strand at 477.464 kb on + strand at 477.465 kb on - strand at 477.470 kb on + strand at 477.470 kb on + strand at 477.470 kb on + strand at 477.484 kb on + strand at 477.485 kb on - strand at 477.485 kb on - strand at 477.588 kb on + strand at 477.589 kb on - strand at 477.663 kb on + strand at 477.663 kb on + strand at 477.663 kb on + strand at 477.663 kb on + strand at 477.664 kb on - strand at 477.664 kb on - strand at 477.664 kb on - strand at 477.664 kb on - strand at 477.696 kb on + strand at 477.795 kb on + strand, within Psest_0439 at 477.795 kb on + strand, within Psest_0439 at 477.795 kb on + strand, within Psest_0439 at 477.796 kb on - strand, within Psest_0439 at 477.796 kb on - strand, within Psest_0439 at 477.796 kb on - strand, within Psest_0439 at 477.827 kb on - strand, within Psest_0439 at 478.038 kb on + strand, within Psest_0439 at 478.170 kb on - strand, within Psest_0439 at 478.170 kb on - strand, within Psest_0439 at 478.170 kb on - strand, within Psest_0439 at 478.301 kb on + strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.320 kb on - strand, within Psest_0439 at 478.320 kb on - strand, within Psest_0439 at 478.398 kb on + strand, within Psest_0439 at 478.399 kb on - strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.703 kb on + strand, within Psest_0439 at 478.703 kb on + strand, within Psest_0439 at 478.704 kb on - strand, within Psest_0439 at 478.704 kb on - strand, within Psest_0439 at 478.708 kb on + strand, within Psest_0439 at 478.708 kb on + strand, within Psest_0439 at 478.727 kb on - strand, within Psest_0439 at 478.917 kb on + strand at 478.918 kb on - strand at 478.918 kb on - strand at 478.969 kb on + strand at 478.969 kb on + strand at 479.043 kb on + strand at 479.043 kb on + strand at 479.044 kb on - strand at 479.044 kb on - strand at 479.044 kb on - strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.058 kb on - strand at 479.086 kb on - strand at 479.147 kb on + strand at 479.147 kb on + strand at 479.147 kb on + strand at 479.162 kb on + strand at 479.162 kb on + strand at 479.163 kb on - strand at 479.163 kb on - strand at 479.192 kb on + strand at 479.192 kb on + strand at 479.193 kb on - strand at 479.224 kb on + strand at 479.224 kb on + strand at 479.225 kb on - strand at 479.225 kb on - strand at 479.258 kb on + strand at 479.259 kb on - strand at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.438 kb on - strand, within Psest_0440 at 479.438 kb on - strand, within Psest_0440 at 479.556 kb on + strand at 479.556 kb on + strand at 479.556 kb on + strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.603 kb on + strand at 479.603 kb on + strand at 479.604 kb on - strand at 479.658 kb on - strand at 479.690 kb on + strand at 479.691 kb on - strand at 479.691 kb on - strand at 479.691 kb on - strand at 479.711 kb on + strand at 479.712 kb on - strand at 479.712 kb on - strand at 479.712 kb on - strand at 479.731 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.861 kb on - strand at 479.861 kb on - strand at 479.879 kb on + strand at 479.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 476,654 + Psest_0438 0.78 -0.3 476,655 - Psest_0438 0.78 +0.3 476,741 + Psest_0438 0.80 -0.3 476,741 + Psest_0438 0.80 -1.3 476,741 + Psest_0438 0.80 +0.7 476,754 + Psest_0438 0.81 -0.7 476,754 + Psest_0438 0.81 -1.8 476,754 + Psest_0438 0.81 +2.1 476,754 + Psest_0438 0.81 +0.8 476,754 + Psest_0438 0.81 -0.7 476,754 + Psest_0438 0.81 -0.1 476,754 + Psest_0438 0.81 -0.2 476,754 + Psest_0438 0.81 +0.3 476,754 + Psest_0438 0.81 +1.6 476,754 + Psest_0438 0.81 +1.5 476,755 - Psest_0438 0.81 -3.2 476,755 - Psest_0438 0.81 +0.7 476,755 - Psest_0438 0.81 +1.6 476,755 - Psest_0438 0.81 -0.1 476,755 - Psest_0438 0.81 +0.4 476,755 - Psest_0438 0.81 +0.2 476,798 + Psest_0438 0.82 +1.1 476,798 + Psest_0438 0.82 -1.3 476,798 + Psest_0438 0.82 +1.7 476,798 + Psest_0438 0.82 -0.4 476,799 - Psest_0438 0.82 +0.1 476,799 - Psest_0438 0.82 +0.8 476,799 - Psest_0438 0.82 -0.3 476,856 + Psest_0438 0.83 +0.1 476,856 + Psest_0438 0.83 -0.5 476,856 + Psest_0438 0.83 +0.9 476,856 + Psest_0438 0.83 +1.0 476,856 + Psest_0438 0.83 -0.7 476,856 + Psest_0438 0.83 +0.0 476,857 - Psest_0438 0.83 +1.0 476,857 - Psest_0438 0.83 +0.8 476,857 - Psest_0438 0.83 -2.2 476,857 - Psest_0438 0.83 +0.5 476,857 - Psest_0438 0.83 -0.3 476,857 - Psest_0438 0.83 +1.5 476,884 + Psest_0438 0.83 -2.0 476,885 - Psest_0438 0.84 +1.9 476,902 + Psest_0438 0.84 +0.9 476,981 + Psest_0438 0.86 -1.0 476,992 + Psest_0438 0.86 +0.0 476,993 - Psest_0438 0.86 -1.4 476,993 - Psest_0438 0.86 +1.9 476,996 - Psest_0438 0.86 +0.5 477,011 + Psest_0438 0.86 +1.0 477,011 + Psest_0438 0.86 +0.2 477,011 + Psest_0438 0.86 +0.0 477,012 - Psest_0438 0.86 -0.2 477,024 + Psest_0438 0.87 -1.3 477,024 + Psest_0438 0.87 +0.9 477,024 + Psest_0438 0.87 +0.0 477,114 - Psest_0438 0.89 -0.1 477,127 + Psest_0438 0.89 -0.5 477,246 + +0.5 477,246 + -1.0 477,246 + +0.3 477,246 + +1.2 477,246 + +0.8 477,246 + +1.4 477,246 + +3.0 477,246 + +0.5 477,247 - +0.2 477,247 - -3.5 477,247 - -0.1 477,247 - -0.3 477,247 - +0.5 477,272 + -0.0 477,272 + +0.4 477,272 + +3.0 477,272 + +0.3 477,272 + +2.1 477,272 + +0.6 477,272 + +0.3 477,272 + +1.2 477,273 - -0.5 477,273 - -1.5 477,289 + -1.1 477,354 + +0.4 477,407 + +0.9 477,407 + +0.9 477,407 + +1.3 477,407 + -0.2 477,407 + +1.6 477,407 + +1.1 477,407 + +0.8 477,407 + +0.6 477,408 - -1.4 477,408 - +0.3 477,457 + +0.2 477,458 - -1.0 477,464 + +0.3 477,464 + -0.3 477,464 + +0.7 477,464 + -2.5 477,465 - -2.7 477,470 + -3.0 477,470 + +0.8 477,470 + -0.3 477,484 + +0.6 477,485 - +0.9 477,485 - -3.0 477,588 + +0.3 477,589 - -1.5 477,663 + +0.1 477,663 + +2.0 477,663 + +0.3 477,663 + +0.6 477,664 - -3.0 477,664 - -2.4 477,664 - -1.0 477,664 - -2.5 477,696 + +1.0 477,795 + Psest_0439 0.13 +0.3 477,795 + Psest_0439 0.13 +0.1 477,795 + Psest_0439 0.13 -0.5 477,796 - Psest_0439 0.13 +1.6 477,796 - Psest_0439 0.13 +1.0 477,796 - Psest_0439 0.13 +1.6 477,827 - Psest_0439 0.15 -1.3 478,038 + Psest_0439 0.29 +0.5 478,170 - Psest_0439 0.39 +0.6 478,170 - Psest_0439 0.39 -2.0 478,170 - Psest_0439 0.39 +0.0 478,301 + Psest_0439 0.48 +0.3 478,302 - Psest_0439 0.48 -0.3 478,302 - Psest_0439 0.48 -0.8 478,302 - Psest_0439 0.48 -0.3 478,320 - Psest_0439 0.49 -2.4 478,320 - Psest_0439 0.49 -0.6 478,398 + Psest_0439 0.54 -1.2 478,399 - Psest_0439 0.54 +0.7 478,544 + Psest_0439 0.65 +0.5 478,544 + Psest_0439 0.65 -0.4 478,544 + Psest_0439 0.65 +0.6 478,544 + Psest_0439 0.65 -1.8 478,544 + Psest_0439 0.65 +0.2 478,646 + Psest_0439 0.72 +0.6 478,646 + Psest_0439 0.72 +1.4 478,646 + Psest_0439 0.72 +0.5 478,646 + Psest_0439 0.72 +3.5 478,646 + Psest_0439 0.72 +1.5 478,647 - Psest_0439 0.72 -0.8 478,647 - Psest_0439 0.72 +2.3 478,647 - Psest_0439 0.72 -0.8 478,649 + Psest_0439 0.72 +1.2 478,649 + Psest_0439 0.72 +1.3 478,649 + Psest_0439 0.72 +0.5 478,649 + Psest_0439 0.72 +0.6 478,649 + Psest_0439 0.72 +0.4 478,649 + Psest_0439 0.72 -1.0 478,649 + Psest_0439 0.72 -0.0 478,649 + Psest_0439 0.72 +1.7 478,649 + Psest_0439 0.72 +1.3 478,649 + Psest_0439 0.72 +0.7 478,649 + Psest_0439 0.72 -0.6 478,649 + Psest_0439 0.72 +0.4 478,649 + Psest_0439 0.72 +1.2 478,649 + Psest_0439 0.72 +0.2 478,650 - Psest_0439 0.72 -0.3 478,650 - Psest_0439 0.72 -1.5 478,650 - Psest_0439 0.72 +0.2 478,650 - Psest_0439 0.72 +0.4 478,650 - Psest_0439 0.72 +1.1 478,650 - Psest_0439 0.72 -0.4 478,650 - Psest_0439 0.72 +1.3 478,650 - Psest_0439 0.72 +0.9 478,650 - Psest_0439 0.72 +1.5 478,650 - Psest_0439 0.72 -0.0 478,650 - Psest_0439 0.72 -0.6 478,650 - Psest_0439 0.72 -0.4 478,703 + Psest_0439 0.76 -1.4 478,703 + Psest_0439 0.76 +1.4 478,704 - Psest_0439 0.76 -0.1 478,704 - Psest_0439 0.76 -0.5 478,708 + Psest_0439 0.76 +1.2 478,708 + Psest_0439 0.76 +0.0 478,727 - Psest_0439 0.77 +0.2 478,917 + -0.9 478,918 - +1.0 478,918 - +1.1 478,969 + -1.4 478,969 + +0.6 479,043 + -0.6 479,043 + +0.5 479,044 - -0.5 479,044 - +2.1 479,044 - -0.5 479,053 + +0.6 479,053 + +1.2 479,053 + -1.3 479,053 + -0.5 479,053 + -2.3 479,053 + +0.1 479,053 + -0.5 479,053 + -1.5 479,053 + -0.4 479,053 + -1.5 479,053 + +0.5 479,054 - +1.4 479,054 - -0.1 479,054 - +0.1 479,054 - -2.4 479,058 - -0.8 479,086 - -0.6 479,147 + +0.9 479,147 + +0.6 479,147 + -0.5 479,162 + +0.3 479,162 + +0.4 479,163 - -1.3 479,163 - -0.5 479,192 + +0.1 479,192 + -1.1 479,193 - -0.9 479,224 + +0.6 479,224 + -0.5 479,225 - +0.2 479,225 - +0.7 479,258 + +0.7 479,259 - +1.1 479,437 + Psest_0440 0.61 -0.1 479,437 + Psest_0440 0.61 -0.5 479,437 + Psest_0440 0.61 -0.5 479,437 + Psest_0440 0.61 +0.6 479,438 - Psest_0440 0.62 -0.5 479,438 - Psest_0440 0.62 -0.1 479,556 + -1.1 479,556 + -1.5 479,556 + +0.5 479,557 - +0.2 479,557 - -1.7 479,557 - -1.0 479,557 - +0.2 479,557 - -0.5 479,603 + -0.7 479,603 + +1.1 479,604 - +2.0 479,658 - -0.0 479,690 + +1.2 479,691 - +0.7 479,691 - -0.3 479,691 - -0.3 479,711 + +1.1 479,712 - +0.5 479,712 - -2.4 479,712 - +0.9 479,731 + -0.2 479,860 + -1.3 479,860 + -0.9 479,860 + -0.8 479,860 + -1.2 479,860 + -0.5 479,861 - -1.1 479,861 - -2.8 479,879 + -1.2 479,880 - +0.8
Or see this region's nucleotide sequence