Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4348

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4347 and Psest_4348 overlap by 8 nucleotidesPsest_4348 and Psest_4349 are separated by 61 nucleotides Psest_4347: Psest_4347 - PAS domain S-box, at 4,546,139 to 4,548,544 _4347 Psest_4348: Psest_4348 - Heme oxygenase, at 4,548,537 to 4,549,091 _4348 Psest_4349: Psest_4349 - glucosamine--fructose-6-phosphate aminotransferase (isomerizing), at 4,549,153 to 4,551,003 _4349 Position (kb) 4548 4549 4550Strain fitness (log2 ratio) -2 -1 0 1 2at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.552 kb on + strand, within Psest_4347at 4547.553 kb on - strand, within Psest_4347at 4547.553 kb on - strand, within Psest_4347at 4547.897 kb on + strand, within Psest_4347at 4547.897 kb on + strand, within Psest_4347at 4547.897 kb on + strand, within Psest_4347at 4547.897 kb on + strand, within Psest_4347at 4547.897 kb on + strand, within Psest_4347at 4547.898 kb on - strand, within Psest_4347at 4547.898 kb on - strand, within Psest_4347at 4547.898 kb on - strand, within Psest_4347at 4547.898 kb on - strand, within Psest_4347at 4547.898 kb on - strand, within Psest_4347at 4547.898 kb on - strand, within Psest_4347at 4547.904 kb on + strand, within Psest_4347at 4548.021 kb on + strand, within Psest_4347at 4548.096 kb on + strand, within Psest_4347at 4548.096 kb on + strand, within Psest_4347at 4548.409 kb on - strandat 4548.422 kb on + strandat 4548.548 kb on - strandat 4548.548 kb on - strandat 4548.603 kb on + strand, within Psest_4348at 4548.604 kb on - strand, within Psest_4348at 4548.604 kb on - strand, within Psest_4348at 4548.814 kb on + strand, within Psest_4348at 4548.823 kb on + strand, within Psest_4348at 4548.823 kb on + strand, within Psest_4348at 4548.823 kb on + strand, within Psest_4348at 4548.823 kb on + strand, within Psest_4348at 4548.823 kb on + strand, within Psest_4348at 4548.824 kb on - strand, within Psest_4348at 4548.824 kb on - strand, within Psest_4348at 4548.846 kb on + strand, within Psest_4348at 4548.847 kb on - strand, within Psest_4348at 4548.847 kb on - strand, within Psest_4348at 4548.847 kb on - strand, within Psest_4348at 4548.847 kb on - strand, within Psest_4348at 4548.895 kb on + strand, within Psest_4348at 4548.896 kb on - strand, within Psest_4348at 4549.061 kb on + strandat 4549.062 kb on - strandat 4549.078 kb on - strandat 4549.083 kb on + strandat 4549.084 kb on - strandat 4549.084 kb on - strandat 4549.084 kb on - strandat 4549.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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4,547,552 + Psest_4347 0.59 -1.1
4,547,552 + Psest_4347 0.59 +0.3
4,547,552 + Psest_4347 0.59 -1.1
4,547,552 + Psest_4347 0.59 -1.0
4,547,552 + Psest_4347 0.59 -2.0
4,547,552 + Psest_4347 0.59 -2.1
4,547,552 + Psest_4347 0.59 -1.6
4,547,552 + Psest_4347 0.59 -0.7
4,547,553 - Psest_4347 0.59 -0.1
4,547,553 - Psest_4347 0.59 -0.4
4,547,897 + Psest_4347 0.73 +0.1
4,547,897 + Psest_4347 0.73 -0.6
4,547,897 + Psest_4347 0.73 +0.9
4,547,897 + Psest_4347 0.73 -0.8
4,547,897 + Psest_4347 0.73 +0.1
4,547,898 - Psest_4347 0.73 -0.4
4,547,898 - Psest_4347 0.73 +0.4
4,547,898 - Psest_4347 0.73 +0.1
4,547,898 - Psest_4347 0.73 +0.2
4,547,898 - Psest_4347 0.73 +0.9
4,547,898 - Psest_4347 0.73 -0.3
4,547,904 + Psest_4347 0.73 +0.5
4,548,021 + Psest_4347 0.78 +0.5
4,548,096 + Psest_4347 0.81 +0.7
4,548,096 + Psest_4347 0.81 -0.6
4,548,409 - -2.5
4,548,422 + -1.6
4,548,548 - -1.5
4,548,548 - -2.4
4,548,603 + Psest_4348 0.12 +0.5
4,548,604 - Psest_4348 0.12 -0.5
4,548,604 - Psest_4348 0.12 -1.2
4,548,814 + Psest_4348 0.50 +1.0
4,548,823 + Psest_4348 0.52 +1.3
4,548,823 + Psest_4348 0.52 +1.0
4,548,823 + Psest_4348 0.52 +0.8
4,548,823 + Psest_4348 0.52 +1.1
4,548,823 + Psest_4348 0.52 +1.2
4,548,824 - Psest_4348 0.52 -0.2
4,548,824 - Psest_4348 0.52 -1.1
4,548,846 + Psest_4348 0.56 +0.9
4,548,847 - Psest_4348 0.56 -0.5
4,548,847 - Psest_4348 0.56 -2.7
4,548,847 - Psest_4348 0.56 +1.1
4,548,847 - Psest_4348 0.56 -2.4
4,548,895 + Psest_4348 0.65 +1.5
4,548,896 - Psest_4348 0.65 +0.5
4,549,061 + +1.3
4,549,062 - -0.0
4,549,078 - +0.7
4,549,083 + +1.8
4,549,084 - -0.0
4,549,084 - +0.5
4,549,084 - -1.4
4,549,084 - +0.5

Or see this region's nucleotide sequence