Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4249 and Psest_4250 are separated by 8 nucleotides Psest_4250 and Psest_4251 are separated by 27 nucleotides
Psest_4249: Psest_4249 - Rhs element Vgr protein, at 4,433,774 to 4,435,819
_4249
Psest_4250: Psest_4250 - hypothetical protein, at 4,435,828 to 4,436,304
_4250
Psest_4251: Psest_4251 - hypothetical protein, at 4,436,332 to 4,439,172
_4251
Position (kb)
4435
4436
4437 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4434.963 kb on - strand, within Psest_4249 at 4435.182 kb on - strand, within Psest_4249 at 4435.388 kb on + strand, within Psest_4249 at 4435.388 kb on + strand, within Psest_4249 at 4435.388 kb on + strand, within Psest_4249 at 4435.388 kb on + strand, within Psest_4249 at 4435.585 kb on + strand, within Psest_4249 at 4435.607 kb on - strand, within Psest_4249 at 4435.833 kb on + strand at 4435.834 kb on - strand at 4435.834 kb on - strand at 4435.948 kb on + strand, within Psest_4250 at 4435.949 kb on - strand, within Psest_4250 at 4435.949 kb on - strand, within Psest_4250 at 4435.949 kb on - strand, within Psest_4250 at 4435.949 kb on - strand, within Psest_4250 at 4435.997 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.040 kb on - strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.069 kb on + strand, within Psest_4250 at 4436.070 kb on - strand, within Psest_4250 at 4436.070 kb on - strand, within Psest_4250 at 4436.070 kb on - strand, within Psest_4250 at 4436.087 kb on + strand, within Psest_4250 at 4436.087 kb on + strand, within Psest_4250 at 4436.088 kb on - strand, within Psest_4250 at 4436.127 kb on + strand, within Psest_4250 at 4436.127 kb on + strand, within Psest_4250 at 4436.130 kb on - strand, within Psest_4250 at 4436.143 kb on - strand, within Psest_4250 at 4436.149 kb on + strand, within Psest_4250 at 4436.150 kb on - strand, within Psest_4250 at 4436.209 kb on + strand, within Psest_4250 at 4436.210 kb on - strand, within Psest_4250 at 4436.210 kb on - strand, within Psest_4250 at 4436.210 kb on - strand, within Psest_4250 at 4436.210 kb on - strand, within Psest_4250 at 4436.210 kb on - strand, within Psest_4250 at 4436.210 kb on - strand, within Psest_4250 at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.272 kb on + strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.273 kb on - strand at 4436.303 kb on - strand at 4436.314 kb on + strand at 4436.314 kb on + strand at 4436.315 kb on - strand at 4436.315 kb on - strand at 4436.315 kb on - strand at 4436.347 kb on + strand at 4436.395 kb on + strand at 4436.449 kb on + strand at 4436.579 kb on - strand at 4436.600 kb on - strand at 4436.618 kb on - strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.704 kb on + strand, within Psest_4251 at 4436.705 kb on - strand, within Psest_4251 at 4436.705 kb on - strand, within Psest_4251 at 4436.705 kb on - strand, within Psest_4251 at 4436.705 kb on - strand, within Psest_4251 at 4436.715 kb on + strand, within Psest_4251 at 4436.715 kb on + strand, within Psest_4251 at 4436.715 kb on + strand, within Psest_4251 at 4436.715 kb on + strand, within Psest_4251 at 4436.716 kb on - strand, within Psest_4251 at 4436.716 kb on - strand, within Psest_4251 at 4436.758 kb on + strand, within Psest_4251 at 4436.759 kb on - strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.806 kb on + strand, within Psest_4251 at 4436.807 kb on - strand, within Psest_4251 at 4436.807 kb on - strand, within Psest_4251 at 4436.807 kb on - strand, within Psest_4251 at 4436.807 kb on - strand, within Psest_4251 at 4436.808 kb on + strand, within Psest_4251 at 4436.809 kb on - strand, within Psest_4251 at 4436.819 kb on + strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.820 kb on - strand, within Psest_4251 at 4436.905 kb on + strand, within Psest_4251 at 4436.921 kb on + strand, within Psest_4251 at 4436.954 kb on + strand, within Psest_4251 at 4436.954 kb on + strand, within Psest_4251 at 4436.955 kb on - strand, within Psest_4251 at 4437.124 kb on + strand, within Psest_4251 at 4437.124 kb on + strand, within Psest_4251 at 4437.124 kb on + strand, within Psest_4251 at 4437.124 kb on + strand, within Psest_4251 at 4437.124 kb on + strand, within Psest_4251 at 4437.125 kb on - strand, within Psest_4251 at 4437.125 kb on - strand, within Psest_4251 at 4437.125 kb on - strand, within Psest_4251 at 4437.125 kb on - strand, within Psest_4251 at 4437.149 kb on + strand, within Psest_4251 at 4437.150 kb on - strand, within Psest_4251 at 4437.150 kb on - strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.189 kb on + strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.190 kb on - strand, within Psest_4251 at 4437.213 kb on + strand, within Psest_4251 at 4437.265 kb on + strand, within Psest_4251 at 4437.265 kb on + strand, within Psest_4251 at 4437.265 kb on + strand, within Psest_4251 at 4437.265 kb on + strand, within Psest_4251 at 4437.265 kb on + strand, within Psest_4251 at 4437.266 kb on - strand, within Psest_4251 at 4437.266 kb on - strand, within Psest_4251 at 4437.266 kb on - strand, within Psest_4251 at 4437.266 kb on - strand, within Psest_4251 at 4437.266 kb on - strand, within Psest_4251 at 4437.266 kb on - strand, within Psest_4251
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 4,434,963 - Psest_4249 0.58 +0.6 4,435,182 - Psest_4249 0.69 +0.3 4,435,388 + Psest_4249 0.79 +0.3 4,435,388 + Psest_4249 0.79 -0.1 4,435,388 + Psest_4249 0.79 +0.5 4,435,388 + Psest_4249 0.79 -0.8 4,435,585 + Psest_4249 0.89 -0.9 4,435,607 - Psest_4249 0.90 +1.7 4,435,833 + +1.5 4,435,834 - -1.5 4,435,834 - -0.4 4,435,948 + Psest_4250 0.25 -1.8 4,435,949 - Psest_4250 0.25 +0.1 4,435,949 - Psest_4250 0.25 -2.1 4,435,949 - Psest_4250 0.25 -1.5 4,435,949 - Psest_4250 0.25 +1.4 4,435,997 - Psest_4250 0.35 -0.6 4,436,040 - Psest_4250 0.44 -1.9 4,436,040 - Psest_4250 0.44 -2.3 4,436,040 - Psest_4250 0.44 -0.7 4,436,040 - Psest_4250 0.44 -1.5 4,436,040 - Psest_4250 0.44 -1.8 4,436,040 - Psest_4250 0.44 +0.9 4,436,040 - Psest_4250 0.44 +0.3 4,436,040 - Psest_4250 0.44 -0.7 4,436,040 - Psest_4250 0.44 +0.5 4,436,069 + Psest_4250 0.51 -1.1 4,436,069 + Psest_4250 0.51 +0.9 4,436,069 + Psest_4250 0.51 -1.8 4,436,069 + Psest_4250 0.51 -2.9 4,436,069 + Psest_4250 0.51 -1.3 4,436,069 + Psest_4250 0.51 +3.2 4,436,069 + Psest_4250 0.51 +1.7 4,436,069 + Psest_4250 0.51 -0.0 4,436,069 + Psest_4250 0.51 -2.2 4,436,070 - Psest_4250 0.51 -0.9 4,436,070 - Psest_4250 0.51 -1.3 4,436,070 - Psest_4250 0.51 -2.3 4,436,087 + Psest_4250 0.54 -0.7 4,436,087 + Psest_4250 0.54 -1.1 4,436,088 - Psest_4250 0.55 -1.5 4,436,127 + Psest_4250 0.63 -1.9 4,436,127 + Psest_4250 0.63 -2.5 4,436,130 - Psest_4250 0.63 -2.1 4,436,143 - Psest_4250 0.66 -1.0 4,436,149 + Psest_4250 0.67 -0.0 4,436,150 - Psest_4250 0.68 +0.9 4,436,209 + Psest_4250 0.80 -0.5 4,436,210 - Psest_4250 0.80 -1.6 4,436,210 - Psest_4250 0.80 +0.2 4,436,210 - Psest_4250 0.80 -1.2 4,436,210 - Psest_4250 0.80 +0.1 4,436,210 - Psest_4250 0.80 -1.3 4,436,210 - Psest_4250 0.80 -0.4 4,436,272 + -0.7 4,436,272 + -2.1 4,436,272 + -1.4 4,436,272 + -1.3 4,436,272 + -1.3 4,436,272 + -1.8 4,436,272 + +0.9 4,436,272 + +0.0 4,436,272 + -0.8 4,436,272 + +0.6 4,436,272 + +0.5 4,436,273 - -0.3 4,436,273 - -1.2 4,436,273 - -1.5 4,436,273 - -1.5 4,436,273 - -0.7 4,436,273 - -2.2 4,436,273 - -3.8 4,436,273 - -1.8 4,436,273 - -0.7 4,436,303 - +0.5 4,436,314 + -0.5 4,436,314 + -1.7 4,436,315 - -2.1 4,436,315 - -1.9 4,436,315 - -2.1 4,436,347 + -0.1 4,436,395 + +1.5 4,436,449 + -1.4 4,436,579 - -0.1 4,436,600 - -0.7 4,436,618 - Psest_4251 0.10 +0.9 4,436,704 + Psest_4251 0.13 -0.7 4,436,704 + Psest_4251 0.13 -1.0 4,436,704 + Psest_4251 0.13 -1.0 4,436,704 + Psest_4251 0.13 -2.2 4,436,704 + Psest_4251 0.13 -1.1 4,436,704 + Psest_4251 0.13 -1.2 4,436,704 + Psest_4251 0.13 -1.4 4,436,704 + Psest_4251 0.13 -1.5 4,436,704 + Psest_4251 0.13 -0.1 4,436,704 + Psest_4251 0.13 -0.7 4,436,705 - Psest_4251 0.13 -0.9 4,436,705 - Psest_4251 0.13 -1.7 4,436,705 - Psest_4251 0.13 +0.9 4,436,705 - Psest_4251 0.13 -2.2 4,436,715 + Psest_4251 0.13 -0.4 4,436,715 + Psest_4251 0.13 -0.6 4,436,715 + Psest_4251 0.13 -1.1 4,436,715 + Psest_4251 0.13 -1.4 4,436,716 - Psest_4251 0.14 -0.7 4,436,716 - Psest_4251 0.14 -1.1 4,436,758 + Psest_4251 0.15 -0.1 4,436,759 - Psest_4251 0.15 -2.7 4,436,806 + Psest_4251 0.17 -3.1 4,436,806 + Psest_4251 0.17 +0.1 4,436,806 + Psest_4251 0.17 +0.5 4,436,806 + Psest_4251 0.17 -1.8 4,436,806 + Psest_4251 0.17 -1.7 4,436,806 + Psest_4251 0.17 -2.4 4,436,806 + Psest_4251 0.17 -0.9 4,436,807 - Psest_4251 0.17 -1.8 4,436,807 - Psest_4251 0.17 -2.5 4,436,807 - Psest_4251 0.17 -1.1 4,436,807 - Psest_4251 0.17 -1.5 4,436,808 + Psest_4251 0.17 -1.1 4,436,809 - Psest_4251 0.17 -2.9 4,436,819 + Psest_4251 0.17 -0.5 4,436,820 - Psest_4251 0.17 -0.5 4,436,820 - Psest_4251 0.17 +0.9 4,436,820 - Psest_4251 0.17 -3.5 4,436,820 - Psest_4251 0.17 -0.1 4,436,820 - Psest_4251 0.17 -3.4 4,436,820 - Psest_4251 0.17 -0.1 4,436,820 - Psest_4251 0.17 -1.5 4,436,905 + Psest_4251 0.20 -1.7 4,436,921 + Psest_4251 0.21 -3.5 4,436,954 + Psest_4251 0.22 -1.6 4,436,954 + Psest_4251 0.22 -1.6 4,436,955 - Psest_4251 0.22 +2.5 4,437,124 + Psest_4251 0.28 -1.5 4,437,124 + Psest_4251 0.28 -1.1 4,437,124 + Psest_4251 0.28 -1.5 4,437,124 + Psest_4251 0.28 -0.7 4,437,124 + Psest_4251 0.28 -1.1 4,437,125 - Psest_4251 0.28 -1.9 4,437,125 - Psest_4251 0.28 -1.1 4,437,125 - Psest_4251 0.28 -1.7 4,437,125 - Psest_4251 0.28 -0.1 4,437,149 + Psest_4251 0.29 -1.1 4,437,150 - Psest_4251 0.29 -0.5 4,437,150 - Psest_4251 0.29 -2.1 4,437,189 + Psest_4251 0.30 -1.5 4,437,189 + Psest_4251 0.30 +0.3 4,437,189 + Psest_4251 0.30 -1.0 4,437,189 + Psest_4251 0.30 -1.9 4,437,189 + Psest_4251 0.30 -0.1 4,437,189 + Psest_4251 0.30 +0.3 4,437,189 + Psest_4251 0.30 -1.7 4,437,190 - Psest_4251 0.30 -1.1 4,437,190 - Psest_4251 0.30 -2.5 4,437,190 - Psest_4251 0.30 +0.9 4,437,190 - Psest_4251 0.30 +0.5 4,437,190 - Psest_4251 0.30 -1.1 4,437,190 - Psest_4251 0.30 -2.1 4,437,190 - Psest_4251 0.30 -0.4 4,437,190 - Psest_4251 0.30 -1.8 4,437,190 - Psest_4251 0.30 -1.1 4,437,190 - Psest_4251 0.30 -0.4 4,437,213 + Psest_4251 0.31 -0.7 4,437,265 + Psest_4251 0.33 -0.7 4,437,265 + Psest_4251 0.33 +1.4 4,437,265 + Psest_4251 0.33 +1.7 4,437,265 + Psest_4251 0.33 +0.5 4,437,265 + Psest_4251 0.33 -1.7 4,437,266 - Psest_4251 0.33 -1.3 4,437,266 - Psest_4251 0.33 -0.5 4,437,266 - Psest_4251 0.33 -0.6 4,437,266 - Psest_4251 0.33 -1.8 4,437,266 - Psest_4251 0.33 -0.9 4,437,266 - Psest_4251 0.33 -0.7
Or see this region's nucleotide sequence