Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4250

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4249 and Psest_4250 are separated by 8 nucleotidesPsest_4250 and Psest_4251 are separated by 27 nucleotides Psest_4249: Psest_4249 - Rhs element Vgr protein, at 4,433,774 to 4,435,819 _4249 Psest_4250: Psest_4250 - hypothetical protein, at 4,435,828 to 4,436,304 _4250 Psest_4251: Psest_4251 - hypothetical protein, at 4,436,332 to 4,439,172 _4251 Position (kb) 4435 4436 4437Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4434.963 kb on - strand, within Psest_4249at 4435.182 kb on - strand, within Psest_4249at 4435.388 kb on + strand, within Psest_4249at 4435.388 kb on + strand, within Psest_4249at 4435.388 kb on + strand, within Psest_4249at 4435.388 kb on + strand, within Psest_4249at 4435.585 kb on + strand, within Psest_4249at 4435.607 kb on - strand, within Psest_4249at 4435.833 kb on + strandat 4435.834 kb on - strandat 4435.834 kb on - strandat 4435.948 kb on + strand, within Psest_4250at 4435.949 kb on - strand, within Psest_4250at 4435.949 kb on - strand, within Psest_4250at 4435.949 kb on - strand, within Psest_4250at 4435.949 kb on - strand, within Psest_4250at 4435.997 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.040 kb on - strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.069 kb on + strand, within Psest_4250at 4436.070 kb on - strand, within Psest_4250at 4436.070 kb on - strand, within Psest_4250at 4436.070 kb on - strand, within Psest_4250at 4436.087 kb on + strand, within Psest_4250at 4436.087 kb on + strand, within Psest_4250at 4436.088 kb on - strand, within Psest_4250at 4436.127 kb on + strand, within Psest_4250at 4436.127 kb on + strand, within Psest_4250at 4436.130 kb on - strand, within Psest_4250at 4436.143 kb on - strand, within Psest_4250at 4436.149 kb on + strand, within Psest_4250at 4436.150 kb on - strand, within Psest_4250at 4436.209 kb on + strand, within Psest_4250at 4436.210 kb on - strand, within Psest_4250at 4436.210 kb on - strand, within Psest_4250at 4436.210 kb on - strand, within Psest_4250at 4436.210 kb on - strand, within Psest_4250at 4436.210 kb on - strand, within Psest_4250at 4436.210 kb on - strand, within Psest_4250at 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.272 kb on + strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.273 kb on - strandat 4436.303 kb on - strandat 4436.314 kb on + strandat 4436.314 kb on + strandat 4436.315 kb on - strandat 4436.315 kb on - strandat 4436.315 kb on - strandat 4436.347 kb on + strandat 4436.395 kb on + strandat 4436.449 kb on + strandat 4436.579 kb on - strandat 4436.600 kb on - strandat 4436.618 kb on - strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.704 kb on + strand, within Psest_4251at 4436.705 kb on - strand, within Psest_4251at 4436.705 kb on - strand, within Psest_4251at 4436.705 kb on - strand, within Psest_4251at 4436.705 kb on - strand, within Psest_4251at 4436.715 kb on + strand, within Psest_4251at 4436.715 kb on + strand, within Psest_4251at 4436.715 kb on + strand, within Psest_4251at 4436.715 kb on + strand, within Psest_4251at 4436.716 kb on - strand, within Psest_4251at 4436.716 kb on - strand, within Psest_4251at 4436.758 kb on + strand, within Psest_4251at 4436.759 kb on - strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.806 kb on + strand, within Psest_4251at 4436.807 kb on - strand, within Psest_4251at 4436.807 kb on - strand, within Psest_4251at 4436.807 kb on - strand, within Psest_4251at 4436.807 kb on - strand, within Psest_4251at 4436.808 kb on + strand, within Psest_4251at 4436.809 kb on - strand, within Psest_4251at 4436.819 kb on + strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.820 kb on - strand, within Psest_4251at 4436.905 kb on + strand, within Psest_4251at 4436.921 kb on + strand, within Psest_4251at 4436.954 kb on + strand, within Psest_4251at 4436.954 kb on + strand, within Psest_4251at 4436.955 kb on - strand, within Psest_4251at 4437.124 kb on + strand, within Psest_4251at 4437.124 kb on + strand, within Psest_4251at 4437.124 kb on + strand, within Psest_4251at 4437.124 kb on + strand, within Psest_4251at 4437.124 kb on + strand, within Psest_4251at 4437.125 kb on - strand, within Psest_4251at 4437.125 kb on - strand, within Psest_4251at 4437.125 kb on - strand, within Psest_4251at 4437.125 kb on - strand, within Psest_4251at 4437.149 kb on + strand, within Psest_4251at 4437.150 kb on - strand, within Psest_4251at 4437.150 kb on - strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.189 kb on + strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.190 kb on - strand, within Psest_4251at 4437.213 kb on + strand, within Psest_4251at 4437.265 kb on + strand, within Psest_4251at 4437.265 kb on + strand, within Psest_4251at 4437.265 kb on + strand, within Psest_4251at 4437.265 kb on + strand, within Psest_4251at 4437.265 kb on + strand, within Psest_4251at 4437.266 kb on - strand, within Psest_4251at 4437.266 kb on - strand, within Psest_4251at 4437.266 kb on - strand, within Psest_4251at 4437.266 kb on - strand, within Psest_4251at 4437.266 kb on - strand, within Psest_4251at 4437.266 kb on - strand, within Psest_4251

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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4,434,963 - Psest_4249 0.58 +0.6
4,435,182 - Psest_4249 0.69 +0.3
4,435,388 + Psest_4249 0.79 +0.3
4,435,388 + Psest_4249 0.79 -0.1
4,435,388 + Psest_4249 0.79 +0.5
4,435,388 + Psest_4249 0.79 -0.8
4,435,585 + Psest_4249 0.89 -0.9
4,435,607 - Psest_4249 0.90 +1.7
4,435,833 + +1.5
4,435,834 - -1.5
4,435,834 - -0.4
4,435,948 + Psest_4250 0.25 -1.8
4,435,949 - Psest_4250 0.25 +0.1
4,435,949 - Psest_4250 0.25 -2.1
4,435,949 - Psest_4250 0.25 -1.5
4,435,949 - Psest_4250 0.25 +1.4
4,435,997 - Psest_4250 0.35 -0.6
4,436,040 - Psest_4250 0.44 -1.9
4,436,040 - Psest_4250 0.44 -2.3
4,436,040 - Psest_4250 0.44 -0.7
4,436,040 - Psest_4250 0.44 -1.5
4,436,040 - Psest_4250 0.44 -1.8
4,436,040 - Psest_4250 0.44 +0.9
4,436,040 - Psest_4250 0.44 +0.3
4,436,040 - Psest_4250 0.44 -0.7
4,436,040 - Psest_4250 0.44 +0.5
4,436,069 + Psest_4250 0.51 -1.1
4,436,069 + Psest_4250 0.51 +0.9
4,436,069 + Psest_4250 0.51 -1.8
4,436,069 + Psest_4250 0.51 -2.9
4,436,069 + Psest_4250 0.51 -1.3
4,436,069 + Psest_4250 0.51 +3.2
4,436,069 + Psest_4250 0.51 +1.7
4,436,069 + Psest_4250 0.51 -0.0
4,436,069 + Psest_4250 0.51 -2.2
4,436,070 - Psest_4250 0.51 -0.9
4,436,070 - Psest_4250 0.51 -1.3
4,436,070 - Psest_4250 0.51 -2.3
4,436,087 + Psest_4250 0.54 -0.7
4,436,087 + Psest_4250 0.54 -1.1
4,436,088 - Psest_4250 0.55 -1.5
4,436,127 + Psest_4250 0.63 -1.9
4,436,127 + Psest_4250 0.63 -2.5
4,436,130 - Psest_4250 0.63 -2.1
4,436,143 - Psest_4250 0.66 -1.0
4,436,149 + Psest_4250 0.67 -0.0
4,436,150 - Psest_4250 0.68 +0.9
4,436,209 + Psest_4250 0.80 -0.5
4,436,210 - Psest_4250 0.80 -1.6
4,436,210 - Psest_4250 0.80 +0.2
4,436,210 - Psest_4250 0.80 -1.2
4,436,210 - Psest_4250 0.80 +0.1
4,436,210 - Psest_4250 0.80 -1.3
4,436,210 - Psest_4250 0.80 -0.4
4,436,272 + -0.7
4,436,272 + -2.1
4,436,272 + -1.4
4,436,272 + -1.3
4,436,272 + -1.3
4,436,272 + -1.8
4,436,272 + +0.9
4,436,272 + +0.0
4,436,272 + -0.8
4,436,272 + +0.6
4,436,272 + +0.5
4,436,273 - -0.3
4,436,273 - -1.2
4,436,273 - -1.5
4,436,273 - -1.5
4,436,273 - -0.7
4,436,273 - -2.2
4,436,273 - -3.8
4,436,273 - -1.8
4,436,273 - -0.7
4,436,303 - +0.5
4,436,314 + -0.5
4,436,314 + -1.7
4,436,315 - -2.1
4,436,315 - -1.9
4,436,315 - -2.1
4,436,347 + -0.1
4,436,395 + +1.5
4,436,449 + -1.4
4,436,579 - -0.1
4,436,600 - -0.7
4,436,618 - Psest_4251 0.10 +0.9
4,436,704 + Psest_4251 0.13 -0.7
4,436,704 + Psest_4251 0.13 -1.0
4,436,704 + Psest_4251 0.13 -1.0
4,436,704 + Psest_4251 0.13 -2.2
4,436,704 + Psest_4251 0.13 -1.1
4,436,704 + Psest_4251 0.13 -1.2
4,436,704 + Psest_4251 0.13 -1.4
4,436,704 + Psest_4251 0.13 -1.5
4,436,704 + Psest_4251 0.13 -0.1
4,436,704 + Psest_4251 0.13 -0.7
4,436,705 - Psest_4251 0.13 -0.9
4,436,705 - Psest_4251 0.13 -1.7
4,436,705 - Psest_4251 0.13 +0.9
4,436,705 - Psest_4251 0.13 -2.2
4,436,715 + Psest_4251 0.13 -0.4
4,436,715 + Psest_4251 0.13 -0.6
4,436,715 + Psest_4251 0.13 -1.1
4,436,715 + Psest_4251 0.13 -1.4
4,436,716 - Psest_4251 0.14 -0.7
4,436,716 - Psest_4251 0.14 -1.1
4,436,758 + Psest_4251 0.15 -0.1
4,436,759 - Psest_4251 0.15 -2.7
4,436,806 + Psest_4251 0.17 -3.1
4,436,806 + Psest_4251 0.17 +0.1
4,436,806 + Psest_4251 0.17 +0.5
4,436,806 + Psest_4251 0.17 -1.8
4,436,806 + Psest_4251 0.17 -1.7
4,436,806 + Psest_4251 0.17 -2.4
4,436,806 + Psest_4251 0.17 -0.9
4,436,807 - Psest_4251 0.17 -1.8
4,436,807 - Psest_4251 0.17 -2.5
4,436,807 - Psest_4251 0.17 -1.1
4,436,807 - Psest_4251 0.17 -1.5
4,436,808 + Psest_4251 0.17 -1.1
4,436,809 - Psest_4251 0.17 -2.9
4,436,819 + Psest_4251 0.17 -0.5
4,436,820 - Psest_4251 0.17 -0.5
4,436,820 - Psest_4251 0.17 +0.9
4,436,820 - Psest_4251 0.17 -3.5
4,436,820 - Psest_4251 0.17 -0.1
4,436,820 - Psest_4251 0.17 -3.4
4,436,820 - Psest_4251 0.17 -0.1
4,436,820 - Psest_4251 0.17 -1.5
4,436,905 + Psest_4251 0.20 -1.7
4,436,921 + Psest_4251 0.21 -3.5
4,436,954 + Psest_4251 0.22 -1.6
4,436,954 + Psest_4251 0.22 -1.6
4,436,955 - Psest_4251 0.22 +2.5
4,437,124 + Psest_4251 0.28 -1.5
4,437,124 + Psest_4251 0.28 -1.1
4,437,124 + Psest_4251 0.28 -1.5
4,437,124 + Psest_4251 0.28 -0.7
4,437,124 + Psest_4251 0.28 -1.1
4,437,125 - Psest_4251 0.28 -1.9
4,437,125 - Psest_4251 0.28 -1.1
4,437,125 - Psest_4251 0.28 -1.7
4,437,125 - Psest_4251 0.28 -0.1
4,437,149 + Psest_4251 0.29 -1.1
4,437,150 - Psest_4251 0.29 -0.5
4,437,150 - Psest_4251 0.29 -2.1
4,437,189 + Psest_4251 0.30 -1.5
4,437,189 + Psest_4251 0.30 +0.3
4,437,189 + Psest_4251 0.30 -1.0
4,437,189 + Psest_4251 0.30 -1.9
4,437,189 + Psest_4251 0.30 -0.1
4,437,189 + Psest_4251 0.30 +0.3
4,437,189 + Psest_4251 0.30 -1.7
4,437,190 - Psest_4251 0.30 -1.1
4,437,190 - Psest_4251 0.30 -2.5
4,437,190 - Psest_4251 0.30 +0.9
4,437,190 - Psest_4251 0.30 +0.5
4,437,190 - Psest_4251 0.30 -1.1
4,437,190 - Psest_4251 0.30 -2.1
4,437,190 - Psest_4251 0.30 -0.4
4,437,190 - Psest_4251 0.30 -1.8
4,437,190 - Psest_4251 0.30 -1.1
4,437,190 - Psest_4251 0.30 -0.4
4,437,213 + Psest_4251 0.31 -0.7
4,437,265 + Psest_4251 0.33 -0.7
4,437,265 + Psest_4251 0.33 +1.4
4,437,265 + Psest_4251 0.33 +1.7
4,437,265 + Psest_4251 0.33 +0.5
4,437,265 + Psest_4251 0.33 -1.7
4,437,266 - Psest_4251 0.33 -1.3
4,437,266 - Psest_4251 0.33 -0.5
4,437,266 - Psest_4251 0.33 -0.6
4,437,266 - Psest_4251 0.33 -1.8
4,437,266 - Psest_4251 0.33 -0.9
4,437,266 - Psest_4251 0.33 -0.7

Or see this region's nucleotide sequence