Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0415 and Psest_0416 are separated by 85 nucleotides Psest_0416 and Psest_0417 are separated by 360 nucleotides Psest_0417 and Psest_0418 are separated by 149 nucleotides
Psest_0415: Psest_0415 - dethiobiotin synthase, at 450,447 to 451,133
_0415
Psest_0416: Psest_0416 - hypothetical protein, at 451,219 to 451,467
_0416
Psest_0417: Psest_0417 - Acyl-CoA dehydrogenases, at 451,828 to 453,633
_0417
Psest_0418: Psest_0418 - diguanylate cyclase (GGDEF) domain, at 453,783 to 455,072
_0418
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 450.837 kb on + strand, within Psest_0415 at 450.837 kb on + strand, within Psest_0415 at 450.837 kb on + strand, within Psest_0415 at 450.838 kb on - strand, within Psest_0415 at 450.922 kb on + strand, within Psest_0415 at 450.922 kb on + strand, within Psest_0415 at 450.923 kb on - strand, within Psest_0415 at 450.923 kb on - strand, within Psest_0415 at 450.923 kb on - strand, within Psest_0415 at 450.923 kb on - strand, within Psest_0415 at 451.233 kb on + strand at 451.261 kb on + strand, within Psest_0416 at 451.261 kb on + strand, within Psest_0416 at 451.261 kb on + strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.262 kb on - strand, within Psest_0416 at 451.633 kb on - strand at 451.633 kb on - strand at 451.633 kb on - strand at 451.633 kb on - strand at 451.671 kb on + strand at 451.671 kb on + strand at 451.672 kb on - strand at 451.672 kb on - strand at 451.713 kb on + strand at 451.713 kb on + strand at 451.713 kb on + strand at 451.809 kb on + strand at 451.822 kb on + strand at 451.837 kb on + strand at 451.837 kb on + strand at 451.838 kb on - strand at 451.868 kb on + strand at 451.868 kb on + strand at 451.869 kb on - strand at 451.889 kb on - strand at 451.901 kb on - strand at 452.275 kb on + strand, within Psest_0417 at 452.275 kb on + strand, within Psest_0417 at 452.392 kb on + strand, within Psest_0417 at 452.393 kb on - strand, within Psest_0417 at 452.393 kb on - strand, within Psest_0417 at 452.920 kb on + strand, within Psest_0417 at 453.071 kb on + strand, within Psest_0417 at 453.073 kb on + strand, within Psest_0417 at 453.073 kb on + strand, within Psest_0417 at 453.074 kb on - strand, within Psest_0417 at 453.145 kb on + strand, within Psest_0417 at 453.145 kb on + strand, within Psest_0417 at 453.394 kb on + strand, within Psest_0417 at 453.403 kb on + strand, within Psest_0417 at 453.526 kb on + strand at 453.648 kb on - strand at 453.766 kb on - strand at 453.897 kb on + strand at 453.897 kb on + strand at 453.897 kb on + strand at 453.897 kb on + strand at 453.897 kb on + strand at 453.898 kb on - strand at 453.898 kb on - strand at 453.898 kb on - strand at 453.898 kb on - strand at 453.917 kb on - strand, within Psest_0418 at 453.952 kb on - strand, within Psest_0418 at 453.952 kb on - strand, within Psest_0418 at 453.952 kb on - strand, within Psest_0418 at 453.952 kb on - strand, within Psest_0418 at 453.991 kb on - strand, within Psest_0418 at 453.999 kb on + strand, within Psest_0418 at 453.999 kb on + strand, within Psest_0418 at 453.999 kb on + strand, within Psest_0418 at 453.999 kb on + strand, within Psest_0418 at 454.026 kb on + strand, within Psest_0418 at 454.026 kb on + strand, within Psest_0418 at 454.026 kb on + strand, within Psest_0418 at 454.026 kb on + strand, within Psest_0418 at 454.026 kb on + strand, within Psest_0418 at 454.027 kb on - strand, within Psest_0418 at 454.030 kb on - strand, within Psest_0418 at 454.341 kb on + strand, within Psest_0418 at 454.342 kb on - strand, within Psest_0418 at 454.497 kb on + strand, within Psest_0418 at 454.497 kb on + strand, within Psest_0418 at 454.497 kb on + strand, within Psest_0418 at 454.497 kb on + strand, within Psest_0418 at 454.498 kb on - strand, within Psest_0418 at 454.582 kb on - strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.632 kb on + strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418 at 454.633 kb on - strand, within Psest_0418
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 450,837 + Psest_0415 0.57 +0.1 450,837 + Psest_0415 0.57 -1.8 450,837 + Psest_0415 0.57 -1.3 450,838 - Psest_0415 0.57 -2.9 450,922 + Psest_0415 0.69 -1.4 450,922 + Psest_0415 0.69 -0.9 450,923 - Psest_0415 0.69 +0.1 450,923 - Psest_0415 0.69 -0.5 450,923 - Psest_0415 0.69 -0.9 450,923 - Psest_0415 0.69 -1.3 451,233 + -0.4 451,261 + Psest_0416 0.17 -0.7 451,261 + Psest_0416 0.17 -1.9 451,261 + Psest_0416 0.17 +0.3 451,262 - Psest_0416 0.17 -2.6 451,262 - Psest_0416 0.17 +0.1 451,262 - Psest_0416 0.17 +0.3 451,262 - Psest_0416 0.17 +2.6 451,262 - Psest_0416 0.17 -0.0 451,262 - Psest_0416 0.17 +0.9 451,262 - Psest_0416 0.17 -0.2 451,633 - +1.1 451,633 - -0.4 451,633 - +1.6 451,633 - -0.1 451,671 + -1.5 451,671 + -1.5 451,672 - +0.0 451,672 - +1.0 451,713 + -0.5 451,713 + -0.5 451,713 + -1.6 451,809 + -0.9 451,822 + +4.2 451,837 + +3.5 451,837 + +3.3 451,838 - +4.5 451,868 + +2.2 451,868 + +3.5 451,869 - +3.1 451,889 - +2.4 451,901 - +2.3 452,275 + Psest_0417 0.25 +3.8 452,275 + Psest_0417 0.25 +3.7 452,392 + Psest_0417 0.31 +1.8 452,393 - Psest_0417 0.31 +3.6 452,393 - Psest_0417 0.31 +2.1 452,920 + Psest_0417 0.60 +4.0 453,071 + Psest_0417 0.69 +3.1 453,073 + Psest_0417 0.69 +2.2 453,073 + Psest_0417 0.69 +3.6 453,074 - Psest_0417 0.69 +2.6 453,145 + Psest_0417 0.73 +2.9 453,145 + Psest_0417 0.73 +2.5 453,394 + Psest_0417 0.87 +3.2 453,403 + Psest_0417 0.87 +2.6 453,526 + +2.4 453,648 - -1.7 453,766 - -0.2 453,897 + -0.3 453,897 + +0.6 453,897 + +0.9 453,897 + +1.5 453,897 + +0.4 453,898 - -0.7 453,898 - -0.1 453,898 - +0.1 453,898 - +0.1 453,917 - Psest_0418 0.10 +1.4 453,952 - Psest_0418 0.13 +0.2 453,952 - Psest_0418 0.13 -0.7 453,952 - Psest_0418 0.13 +0.6 453,952 - Psest_0418 0.13 +0.6 453,991 - Psest_0418 0.16 +0.7 453,999 + Psest_0418 0.17 +0.6 453,999 + Psest_0418 0.17 -0.7 453,999 + Psest_0418 0.17 +0.1 453,999 + Psest_0418 0.17 -0.5 454,026 + Psest_0418 0.19 +0.4 454,026 + Psest_0418 0.19 +1.0 454,026 + Psest_0418 0.19 +0.5 454,026 + Psest_0418 0.19 +0.8 454,026 + Psest_0418 0.19 +1.4 454,027 - Psest_0418 0.19 +2.1 454,030 - Psest_0418 0.19 -0.9 454,341 + Psest_0418 0.43 -1.8 454,342 - Psest_0418 0.43 -0.3 454,497 + Psest_0418 0.55 -0.1 454,497 + Psest_0418 0.55 +0.2 454,497 + Psest_0418 0.55 +0.7 454,497 + Psest_0418 0.55 +0.6 454,498 - Psest_0418 0.55 -1.3 454,582 - Psest_0418 0.62 +1.1 454,632 + Psest_0418 0.66 +0.7 454,632 + Psest_0418 0.66 +1.4 454,632 + Psest_0418 0.66 +0.1 454,632 + Psest_0418 0.66 -0.9 454,632 + Psest_0418 0.66 -0.6 454,632 + Psest_0418 0.66 +1.3 454,632 + Psest_0418 0.66 -1.4 454,632 + Psest_0418 0.66 +1.2 454,632 + Psest_0418 0.66 +0.9 454,632 + Psest_0418 0.66 +1.1 454,633 - Psest_0418 0.66 -1.3 454,633 - Psest_0418 0.66 +1.5 454,633 - Psest_0418 0.66 +1.9 454,633 - Psest_0418 0.66 +0.5 454,633 - Psest_0418 0.66 -1.6 454,633 - Psest_0418 0.66 +0.4 454,633 - Psest_0418 0.66 +1.1 454,633 - Psest_0418 0.66 -2.5 454,633 - Psest_0418 0.66 -0.1 454,633 - Psest_0418 0.66 -0.8
Or see this region's nucleotide sequence