Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4220
Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Def Benzalkonium Chloride 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,400,883 | + | -1.2 | |||
4,400,884 | - | -2.2 | |||
4,400,922 | + | -0.1 | |||
4,401,020 | + | Psest_4220 | 0.33 | -2.7 | |
4,401,079 | + | Psest_4220 | 0.54 | -1.5 | |
4,401,208 | + | -2.7 | |||
4,401,376 | + | Psest_4221 | 0.15 | +0.3 | |
4,401,376 | + | Psest_4221 | 0.15 | +0.9 | |
4,401,377 | - | Psest_4221 | 0.15 | +0.1 | |
4,401,377 | - | Psest_4221 | 0.15 | -1.0 | |
4,401,865 | + | Psest_4221 | 0.66 | +0.8 | |
4,401,866 | - | Psest_4221 | 0.66 | +1.4 | |
4,401,866 | - | Psest_4221 | 0.66 | +0.5 | |
4,401,866 | - | Psest_4221 | 0.66 | -0.9 | |
4,401,893 | - | Psest_4221 | 0.69 | +0.6 | |
4,401,979 | + | Psest_4221 | 0.78 | -0.6 | |
4,402,172 | + | -2.2 | |||
4,402,173 | - | +0.4 | |||
4,402,173 | - | -0.9 |
Or see this region's nucleotide sequence