Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0413

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0412 and Psest_0413 overlap by 8 nucleotidesPsest_0413 and Psest_0414 overlap by 8 nucleotidesPsest_0414 and Psest_0415 are separated by 1 nucleotides Psest_0412: Psest_0412 - 8-amino-7-oxononanoate synthase, at 447,762 to 448,940 _0412 Psest_0413: Psest_0413 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 448,933 to 449,658 _0413 Psest_0414: Psest_0414 - biotin biosynthesis protein BioC, at 449,651 to 450,445 _0414 Psest_0415: Psest_0415 - dethiobiotin synthase, at 450,447 to 451,133 _0415 Position (kb) 448 449 450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.080 kb on + strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.081 kb on - strand, within Psest_0412at 448.082 kb on + strand, within Psest_0412at 448.083 kb on - strand, within Psest_0412at 448.282 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.545 kb on + strand, within Psest_0412at 448.546 kb on - strand, within Psest_0412at 448.546 kb on - strand, within Psest_0412at 448.546 kb on - strand, within Psest_0412at 448.551 kb on + strand, within Psest_0412at 448.551 kb on + strand, within Psest_0412at 448.551 kb on + strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.552 kb on - strand, within Psest_0412at 448.613 kb on + strand, within Psest_0412at 448.614 kb on - strand, within Psest_0412at 448.859 kb on + strandat 449.196 kb on + strand, within Psest_0413at 449.196 kb on + strand, within Psest_0413at 449.196 kb on + strand, within Psest_0413at 449.196 kb on + strand, within Psest_0413at 449.197 kb on - strand, within Psest_0413at 449.197 kb on - strand, within Psest_0413at 449.197 kb on - strand, within Psest_0413at 449.197 kb on - strand, within Psest_0413at 449.197 kb on - strand, within Psest_0413at 449.341 kb on + strand, within Psest_0413at 449.341 kb on + strand, within Psest_0413at 449.341 kb on + strand, within Psest_0413at 449.342 kb on - strand, within Psest_0413at 449.342 kb on - strand, within Psest_0413at 449.461 kb on + strand, within Psest_0413at 449.462 kb on - strand, within Psest_0413at 449.462 kb on - strand, within Psest_0413at 449.721 kb on - strandat 449.721 kb on - strandat 449.721 kb on - strandat 449.993 kb on + strand, within Psest_0414at 449.993 kb on + strand, within Psest_0414at 449.994 kb on - strand, within Psest_0414at 449.994 kb on - strand, within Psest_0414at 449.994 kb on - strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.182 kb on + strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.183 kb on - strand, within Psest_0414at 450.407 kb on + strandat 450.407 kb on + strandat 450.407 kb on + strandat 450.407 kb on + strandat 450.408 kb on - strandat 450.408 kb on - strandat 450.408 kb on - strandat 450.408 kb on - strandat 450.420 kb on - strandat 450.420 kb on - strandat 450.557 kb on - strand, within Psest_0415

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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448,080 + Psest_0412 0.27 -2.1
448,080 + Psest_0412 0.27 -1.1
448,080 + Psest_0412 0.27 -0.8
448,080 + Psest_0412 0.27 -1.5
448,080 + Psest_0412 0.27 -1.4
448,080 + Psest_0412 0.27 -1.7
448,080 + Psest_0412 0.27 +0.2
448,081 - Psest_0412 0.27 -0.9
448,081 - Psest_0412 0.27 -1.8
448,081 - Psest_0412 0.27 -1.8
448,081 - Psest_0412 0.27 -2.4
448,082 + Psest_0412 0.27 -3.2
448,083 - Psest_0412 0.27 -1.9
448,282 + Psest_0412 0.44 -1.5
448,545 + Psest_0412 0.66 -0.2
448,545 + Psest_0412 0.66 -2.9
448,545 + Psest_0412 0.66 -2.8
448,545 + Psest_0412 0.66 -0.5
448,546 - Psest_0412 0.66 -2.5
448,546 - Psest_0412 0.66 -4.6
448,546 - Psest_0412 0.66 -1.9
448,551 + Psest_0412 0.67 -1.0
448,551 + Psest_0412 0.67 -2.6
448,551 + Psest_0412 0.67 -2.3
448,552 - Psest_0412 0.67 -1.9
448,552 - Psest_0412 0.67 -3.0
448,552 - Psest_0412 0.67 -1.9
448,552 - Psest_0412 0.67 -1.8
448,552 - Psest_0412 0.67 +0.6
448,552 - Psest_0412 0.67 -0.7
448,552 - Psest_0412 0.67 -0.9
448,552 - Psest_0412 0.67 -1.4
448,552 - Psest_0412 0.67 -0.9
448,552 - Psest_0412 0.67 -1.9
448,552 - Psest_0412 0.67 -0.9
448,552 - Psest_0412 0.67 -1.2
448,552 - Psest_0412 0.67 -2.6
448,552 - Psest_0412 0.67 -3.6
448,552 - Psest_0412 0.67 -2.5
448,613 + Psest_0412 0.72 -2.4
448,614 - Psest_0412 0.72 -0.5
448,859 + -1.2
449,196 + Psest_0413 0.36 -1.5
449,196 + Psest_0413 0.36 -2.3
449,196 + Psest_0413 0.36 -1.8
449,196 + Psest_0413 0.36 -2.3
449,197 - Psest_0413 0.36 -1.0
449,197 - Psest_0413 0.36 -2.1
449,197 - Psest_0413 0.36 -3.8
449,197 - Psest_0413 0.36 -1.8
449,197 - Psest_0413 0.36 -3.0
449,341 + Psest_0413 0.56 -2.1
449,341 + Psest_0413 0.56 -1.1
449,341 + Psest_0413 0.56 -0.5
449,342 - Psest_0413 0.56 -2.9
449,342 - Psest_0413 0.56 -2.8
449,461 + Psest_0413 0.73 -1.3
449,462 - Psest_0413 0.73 -2.8
449,462 - Psest_0413 0.73 -2.7
449,721 - -2.8
449,721 - -2.2
449,721 - -3.7
449,993 + Psest_0414 0.43 +0.0
449,993 + Psest_0414 0.43 -2.1
449,994 - Psest_0414 0.43 -3.2
449,994 - Psest_0414 0.43 -2.3
449,994 - Psest_0414 0.43 -0.7
450,182 + Psest_0414 0.67 -3.7
450,182 + Psest_0414 0.67 -2.2
450,182 + Psest_0414 0.67 -1.0
450,182 + Psest_0414 0.67 -0.7
450,183 - Psest_0414 0.67 +0.0
450,183 - Psest_0414 0.67 -1.8
450,183 - Psest_0414 0.67 -2.5
450,183 - Psest_0414 0.67 -2.8
450,407 + -1.6
450,407 + -1.0
450,407 + -0.5
450,407 + -1.4
450,408 - +0.6
450,408 - -2.8
450,408 - -1.6
450,408 - -0.5
450,420 - -1.6
450,420 - -1.5
450,557 - Psest_0415 0.16 +0.1

Or see this region's nucleotide sequence