Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4175 and Psest_4176 overlap by 4 nucleotides Psest_4176 and Psest_4177 overlap by 4 nucleotides Psest_4177 and Psest_4178 are separated by 9 nucleotides
Psest_4175: Psest_4175 - Flagellar motor switch/type III secretory pathway protein, at 4,354,321 to 4,355,160
_4175
Psest_4176: Psest_4176 - flagellar motor switch protein FliN, at 4,355,157 to 4,355,528
_4176
Psest_4177: Psest_4177 - flagellar biosynthetic protein FliP, at 4,355,525 to 4,356,280
_4177
Psest_4178: Psest_4178 - hypothetical protein, at 4,356,290 to 4,357,162
_4178
Position (kb)
4355
4356 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4354.199 kb on + strand at 4354.309 kb on - strand at 4354.374 kb on - strand at 4354.420 kb on + strand, within Psest_4175 at 4354.420 kb on + strand, within Psest_4175 at 4354.421 kb on - strand, within Psest_4175 at 4354.421 kb on - strand, within Psest_4175 at 4354.421 kb on - strand, within Psest_4175 at 4354.424 kb on + strand, within Psest_4175 at 4354.424 kb on + strand, within Psest_4175 at 4354.425 kb on - strand, within Psest_4175 at 4354.425 kb on - strand, within Psest_4175 at 4354.425 kb on - strand, within Psest_4175 at 4354.425 kb on - strand, within Psest_4175 at 4354.425 kb on - strand, within Psest_4175 at 4354.465 kb on + strand, within Psest_4175 at 4354.550 kb on - strand, within Psest_4175 at 4354.550 kb on - strand, within Psest_4175 at 4354.600 kb on - strand, within Psest_4175 at 4354.600 kb on - strand, within Psest_4175 at 4354.637 kb on + strand, within Psest_4175 at 4354.637 kb on + strand, within Psest_4175 at 4354.638 kb on - strand, within Psest_4175 at 4354.665 kb on + strand, within Psest_4175 at 4354.665 kb on + strand, within Psest_4175 at 4354.665 kb on + strand, within Psest_4175 at 4354.715 kb on + strand, within Psest_4175 at 4354.716 kb on - strand, within Psest_4175 at 4354.777 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.798 kb on + strand, within Psest_4175 at 4354.799 kb on - strand, within Psest_4175 at 4354.799 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.817 kb on - strand, within Psest_4175 at 4354.827 kb on + strand, within Psest_4175 at 4354.827 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.852 kb on + strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.853 kb on - strand, within Psest_4175 at 4354.858 kb on + strand, within Psest_4175 at 4354.858 kb on + strand, within Psest_4175 at 4354.858 kb on + strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4354.859 kb on - strand, within Psest_4175 at 4355.090 kb on - strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.130 kb on + strand at 4355.131 kb on - strand at 4355.131 kb on - strand at 4355.131 kb on - strand at 4355.748 kb on + strand, within Psest_4177 at 4355.749 kb on - strand, within Psest_4177 at 4355.802 kb on + strand, within Psest_4177 at 4355.876 kb on + strand, within Psest_4177 at 4356.278 kb on + strand at 4356.278 kb on + strand at 4356.279 kb on - strand at 4356.279 kb on - strand at 4356.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 4,354,199 + -2.9 4,354,309 - -0.7 4,354,374 - -0.7 4,354,420 + Psest_4175 0.12 -1.0 4,354,420 + Psest_4175 0.12 -0.8 4,354,421 - Psest_4175 0.12 -0.8 4,354,421 - Psest_4175 0.12 -1.0 4,354,421 - Psest_4175 0.12 -1.4 4,354,424 + Psest_4175 0.12 -1.7 4,354,424 + Psest_4175 0.12 -0.8 4,354,425 - Psest_4175 0.12 -2.1 4,354,425 - Psest_4175 0.12 -1.9 4,354,425 - Psest_4175 0.12 -1.4 4,354,425 - Psest_4175 0.12 +0.4 4,354,425 - Psest_4175 0.12 -0.8 4,354,465 + Psest_4175 0.17 -1.0 4,354,550 - Psest_4175 0.27 +1.9 4,354,550 - Psest_4175 0.27 -1.3 4,354,600 - Psest_4175 0.33 -1.0 4,354,600 - Psest_4175 0.33 +0.0 4,354,637 + Psest_4175 0.38 -3.0 4,354,637 + Psest_4175 0.38 -1.9 4,354,638 - Psest_4175 0.38 +0.1 4,354,665 + Psest_4175 0.41 +0.5 4,354,665 + Psest_4175 0.41 -1.4 4,354,665 + Psest_4175 0.41 +0.0 4,354,715 + Psest_4175 0.47 -1.7 4,354,716 - Psest_4175 0.47 -0.1 4,354,777 + Psest_4175 0.54 -1.6 4,354,798 + Psest_4175 0.57 -0.4 4,354,798 + Psest_4175 0.57 +1.9 4,354,798 + Psest_4175 0.57 +0.3 4,354,798 + Psest_4175 0.57 -0.6 4,354,799 - Psest_4175 0.57 -0.7 4,354,799 - Psest_4175 0.57 -2.1 4,354,817 - Psest_4175 0.59 +0.7 4,354,817 - Psest_4175 0.59 +0.9 4,354,817 - Psest_4175 0.59 -2.9 4,354,817 - Psest_4175 0.59 -2.3 4,354,817 - Psest_4175 0.59 -2.6 4,354,827 + Psest_4175 0.60 -1.6 4,354,827 + Psest_4175 0.60 -2.6 4,354,852 + Psest_4175 0.63 -1.7 4,354,852 + Psest_4175 0.63 -0.5 4,354,852 + Psest_4175 0.63 -0.8 4,354,852 + Psest_4175 0.63 -3.1 4,354,852 + Psest_4175 0.63 -0.9 4,354,852 + Psest_4175 0.63 -1.5 4,354,852 + Psest_4175 0.63 -1.1 4,354,852 + Psest_4175 0.63 -1.0 4,354,853 - Psest_4175 0.63 -0.7 4,354,853 - Psest_4175 0.63 -1.6 4,354,853 - Psest_4175 0.63 +0.2 4,354,853 - Psest_4175 0.63 -0.5 4,354,853 - Psest_4175 0.63 -0.1 4,354,853 - Psest_4175 0.63 +0.1 4,354,853 - Psest_4175 0.63 -1.1 4,354,853 - Psest_4175 0.63 +0.3 4,354,853 - Psest_4175 0.63 -2.6 4,354,853 - Psest_4175 0.63 -2.8 4,354,853 - Psest_4175 0.63 -2.3 4,354,853 - Psest_4175 0.63 -2.8 4,354,853 - Psest_4175 0.63 -1.0 4,354,853 - Psest_4175 0.63 -1.0 4,354,853 - Psest_4175 0.63 -1.3 4,354,858 + Psest_4175 0.64 -0.7 4,354,858 + Psest_4175 0.64 +0.2 4,354,858 + Psest_4175 0.64 +0.5 4,354,859 - Psest_4175 0.64 +0.0 4,354,859 - Psest_4175 0.64 -0.7 4,354,859 - Psest_4175 0.64 -1.6 4,354,859 - Psest_4175 0.64 -0.4 4,354,859 - Psest_4175 0.64 -0.5 4,354,859 - Psest_4175 0.64 -3.1 4,355,090 - +0.5 4,355,130 + -1.4 4,355,130 + +0.2 4,355,130 + -0.7 4,355,130 + +0.3 4,355,130 + -1.4 4,355,131 - -0.3 4,355,131 - +0.1 4,355,131 - -1.4 4,355,748 + Psest_4177 0.29 +1.9 4,355,749 - Psest_4177 0.30 +0.1 4,355,802 + Psest_4177 0.37 +1.1 4,355,876 + Psest_4177 0.46 -0.8 4,356,278 + +0.4 4,356,278 + +0.9 4,356,279 - -0.1 4,356,279 - -0.3 4,356,369 + +0.5
Or see this region's nucleotide sequence