Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4122

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4121 and Psest_4122 are separated by 147 nucleotidesPsest_4122 and Psest_4123 overlap by 19 nucleotides Psest_4121: Psest_4121 - Zonula occludens toxin, at 4,300,088 to 4,301,272 _4121 Psest_4122: Psest_4122 - hypothetical protein, at 4,301,420 to 4,302,700 _4122 Psest_4123: Psest_4123 - Site-specific recombinase XerD, at 4,302,682 to 4,303,740 _4123 Position (kb) 4301 4302 4303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4300.448 kb on - strand, within Psest_4121at 4300.599 kb on - strand, within Psest_4121at 4300.786 kb on + strand, within Psest_4121at 4300.853 kb on + strand, within Psest_4121at 4300.853 kb on + strand, within Psest_4121at 4300.853 kb on + strand, within Psest_4121at 4300.853 kb on + strand, within Psest_4121at 4300.853 kb on + strand, within Psest_4121at 4300.854 kb on - strand, within Psest_4121at 4300.854 kb on - strand, within Psest_4121at 4300.854 kb on - strand, within Psest_4121at 4300.854 kb on - strand, within Psest_4121at 4300.907 kb on + strand, within Psest_4121at 4300.947 kb on - strand, within Psest_4121at 4300.977 kb on - strand, within Psest_4121at 4301.043 kb on - strand, within Psest_4121at 4301.371 kb on + strandat 4301.371 kb on + strandat 4301.429 kb on - strandat 4301.571 kb on - strand, within Psest_4122at 4301.681 kb on + strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.837 kb on + strand, within Psest_4122at 4301.838 kb on - strand, within Psest_4122at 4301.838 kb on - strand, within Psest_4122at 4301.838 kb on - strand, within Psest_4122at 4301.841 kb on - strand, within Psest_4122at 4301.873 kb on - strand, within Psest_4122at 4301.972 kb on - strand, within Psest_4122at 4301.972 kb on - strand, within Psest_4122at 4302.017 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.075 kb on - strand, within Psest_4122at 4302.075 kb on - strand, within Psest_4122at 4302.075 kb on - strand, within Psest_4122at 4302.116 kb on + strand, within Psest_4122at 4302.116 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.372 kb on - strand, within Psest_4122at 4302.449 kb on + strand, within Psest_4122at 4302.449 kb on + strand, within Psest_4122at 4302.450 kb on - strand, within Psest_4122at 4302.450 kb on - strand, within Psest_4122at 4302.458 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.641 kb on + strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.707 kb on + strandat 4302.932 kb on - strand, within Psest_4123at 4302.992 kb on + strand, within Psest_4123at 4303.021 kb on + strand, within Psest_4123at 4303.081 kb on + strand, within Psest_4123at 4303.081 kb on + strand, within Psest_4123at 4303.082 kb on - strand, within Psest_4123at 4303.082 kb on - strand, within Psest_4123at 4303.107 kb on - strand, within Psest_4123at 4303.223 kb on + strand, within Psest_4123at 4303.224 kb on - strand, within Psest_4123at 4303.224 kb on - strand, within Psest_4123at 4303.397 kb on + strand, within Psest_4123at 4303.398 kb on - strand, within Psest_4123at 4303.527 kb on + strand, within Psest_4123at 4303.527 kb on + strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.563 kb on + strand, within Psest_4123

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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4,300,448 - Psest_4121 0.30 +0.2
4,300,599 - Psest_4121 0.43 -0.1
4,300,786 + Psest_4121 0.59 +0.5
4,300,853 + Psest_4121 0.65 -2.1
4,300,853 + Psest_4121 0.65 -0.4
4,300,853 + Psest_4121 0.65 -1.3
4,300,853 + Psest_4121 0.65 +0.5
4,300,853 + Psest_4121 0.65 -0.3
4,300,854 - Psest_4121 0.65 -0.5
4,300,854 - Psest_4121 0.65 -2.6
4,300,854 - Psest_4121 0.65 -0.7
4,300,854 - Psest_4121 0.65 +0.1
4,300,907 + Psest_4121 0.69 +0.5
4,300,947 - Psest_4121 0.72 -0.1
4,300,977 - Psest_4121 0.75 +1.7
4,301,043 - Psest_4121 0.81 +1.0
4,301,371 + -0.1
4,301,371 + -0.3
4,301,429 - +1.2
4,301,571 - Psest_4122 0.12 +0.6
4,301,681 + Psest_4122 0.20 -2.8
4,301,688 - Psest_4122 0.21 -1.0
4,301,688 - Psest_4122 0.21 -1.2
4,301,688 - Psest_4122 0.21 -2.4
4,301,688 - Psest_4122 0.21 -2.3
4,301,837 + Psest_4122 0.33 -1.0
4,301,838 - Psest_4122 0.33 -1.3
4,301,838 - Psest_4122 0.33 +0.1
4,301,838 - Psest_4122 0.33 -3.0
4,301,841 - Psest_4122 0.33 +0.9
4,301,873 - Psest_4122 0.35 +0.3
4,301,972 - Psest_4122 0.43 -0.3
4,301,972 - Psest_4122 0.43 +1.5
4,302,017 + Psest_4122 0.47 +0.4
4,302,074 + Psest_4122 0.51 +2.5
4,302,074 + Psest_4122 0.51 -2.3
4,302,074 + Psest_4122 0.51 +0.7
4,302,074 + Psest_4122 0.51 -1.6
4,302,074 + Psest_4122 0.51 -1.6
4,302,075 - Psest_4122 0.51 -0.8
4,302,075 - Psest_4122 0.51 -0.3
4,302,075 - Psest_4122 0.51 -0.3
4,302,116 + Psest_4122 0.54 -1.4
4,302,116 + Psest_4122 0.54 -1.5
4,302,173 + Psest_4122 0.59 -0.4
4,302,173 + Psest_4122 0.59 -0.6
4,302,173 + Psest_4122 0.59 +1.2
4,302,173 + Psest_4122 0.59 -0.2
4,302,173 + Psest_4122 0.59 -0.6
4,302,173 + Psest_4122 0.59 -0.6
4,302,174 - Psest_4122 0.59 +0.2
4,302,174 - Psest_4122 0.59 +0.4
4,302,174 - Psest_4122 0.59 +0.3
4,302,174 - Psest_4122 0.59 -1.4
4,302,174 - Psest_4122 0.59 -0.0
4,302,174 - Psest_4122 0.59 +0.1
4,302,371 + Psest_4122 0.74 -1.1
4,302,371 + Psest_4122 0.74 -0.6
4,302,371 + Psest_4122 0.74 +0.3
4,302,371 + Psest_4122 0.74 -1.7
4,302,372 - Psest_4122 0.74 -0.1
4,302,449 + Psest_4122 0.80 -1.9
4,302,449 + Psest_4122 0.80 -2.1
4,302,450 - Psest_4122 0.80 +0.5
4,302,450 - Psest_4122 0.80 -2.2
4,302,458 + Psest_4122 0.81 -0.7
4,302,461 + Psest_4122 0.81 +0.0
4,302,461 + Psest_4122 0.81 +0.4
4,302,461 + Psest_4122 0.81 -0.1
4,302,461 + Psest_4122 0.81 -0.0
4,302,461 + Psest_4122 0.81 +0.4
4,302,461 + Psest_4122 0.81 -1.2
4,302,461 + Psest_4122 0.81 -0.4
4,302,461 + Psest_4122 0.81 +0.5
4,302,461 + Psest_4122 0.81 -2.1
4,302,461 + Psest_4122 0.81 -1.4
4,302,461 + Psest_4122 0.81 -1.5
4,302,461 + Psest_4122 0.81 -0.7
4,302,461 + Psest_4122 0.81 -1.0
4,302,461 + Psest_4122 0.81 -0.8
4,302,462 - Psest_4122 0.81 -0.5
4,302,462 - Psest_4122 0.81 -1.1
4,302,462 - Psest_4122 0.81 +0.1
4,302,462 - Psest_4122 0.81 -1.2
4,302,462 - Psest_4122 0.81 +1.2
4,302,462 - Psest_4122 0.81 -1.1
4,302,462 - Psest_4122 0.81 -1.4
4,302,462 - Psest_4122 0.81 -0.1
4,302,462 - Psest_4122 0.81 +1.3
4,302,641 + -1.6
4,302,642 - -1.5
4,302,642 - -1.1
4,302,642 - -1.1
4,302,642 - -0.1
4,302,642 - -1.5
4,302,707 + -0.3
4,302,932 - Psest_4123 0.24 -0.6
4,302,992 + Psest_4123 0.29 -0.8
4,303,021 + Psest_4123 0.32 -1.9
4,303,081 + Psest_4123 0.38 +1.0
4,303,081 + Psest_4123 0.38 -0.3
4,303,082 - Psest_4123 0.38 -1.1
4,303,082 - Psest_4123 0.38 -0.4
4,303,107 - Psest_4123 0.40 -2.4
4,303,223 + Psest_4123 0.51 +0.2
4,303,224 - Psest_4123 0.51 -0.6
4,303,224 - Psest_4123 0.51 +0.3
4,303,397 + Psest_4123 0.68 -0.8
4,303,398 - Psest_4123 0.68 -1.8
4,303,527 + Psest_4123 0.80 -2.4
4,303,527 + Psest_4123 0.80 +0.1
4,303,528 - Psest_4123 0.80 +0.7
4,303,528 - Psest_4123 0.80 -0.8
4,303,528 - Psest_4123 0.80 +0.7
4,303,528 - Psest_4123 0.80 -1.3
4,303,563 + Psest_4123 0.83 -1.6

Or see this region's nucleotide sequence