Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3994

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3992 and Psest_3993 overlap by 4 nucleotidesPsest_3993 and Psest_3994 are separated by 21 nucleotidesPsest_3994 and Psest_3995 are separated by 76 nucleotides Psest_3992: Psest_3992 - Uncharacterized protein conserved in archaea, at 4,161,452 to 4,161,919 _3992 Psest_3993: Psest_3993 - alpha-L-glutamate ligases, RimK family, at 4,161,916 to 4,162,821 _3993 Psest_3994: Psest_3994 - Signal transduction histidine kinase, at 4,162,843 to 4,164,174 _3994 Psest_3995: Psest_3995 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,164,251 to 4,164,985 _3995 Position (kb) 4162 4163 4164 4165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.874 kb on + strandat 4161.952 kb on + strandat 4161.952 kb on + strandat 4161.953 kb on - strandat 4161.953 kb on - strandat 4162.027 kb on + strand, within Psest_3993at 4162.027 kb on + strand, within Psest_3993at 4162.027 kb on + strand, within Psest_3993at 4162.027 kb on + strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4163.108 kb on + strand, within Psest_3994at 4163.108 kb on + strand, within Psest_3994at 4163.109 kb on - strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.903 kb on + strand, within Psest_3994at 4163.904 kb on - strand, within Psest_3994at 4163.915 kb on + strand, within Psest_3994at 4164.077 kb on + strandat 4164.077 kb on + strandat 4164.078 kb on - strandat 4164.078 kb on - strandat 4164.279 kb on + strandat 4164.367 kb on + strand, within Psest_3995at 4164.541 kb on - strand, within Psest_3995at 4164.664 kb on - strand, within Psest_3995at 4165.015 kb on - strandat 4165.151 kb on + strandat 4165.151 kb on + strandat 4165.151 kb on + strandat 4165.152 kb on - strandat 4165.152 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
remove
4,161,872 + Psest_3992 0.90 -1.1
4,161,872 + Psest_3992 0.90 -1.4
4,161,872 + Psest_3992 0.90 -1.7
4,161,872 + Psest_3992 0.90 -0.2
4,161,872 + Psest_3992 0.90 -2.1
4,161,872 + Psest_3992 0.90 +0.9
4,161,872 + Psest_3992 0.90 -0.1
4,161,872 + Psest_3992 0.90 -1.8
4,161,872 + Psest_3992 0.90 -2.1
4,161,872 + Psest_3992 0.90 +1.9
4,161,872 + Psest_3992 0.90 -2.3
4,161,872 + Psest_3992 0.90 -1.7
4,161,872 + Psest_3992 0.90 -0.7
4,161,872 + Psest_3992 0.90 -3.1
4,161,872 + Psest_3992 0.90 -1.1
4,161,872 + Psest_3992 0.90 -0.7
4,161,873 - -0.8
4,161,873 - -1.0
4,161,873 - +0.5
4,161,873 - +0.9
4,161,873 - -3.6
4,161,873 - +2.1
4,161,873 - -1.3
4,161,873 - -1.1
4,161,873 - -0.1
4,161,873 - -1.8
4,161,873 - +0.3
4,161,873 - +0.9
4,161,873 - -0.5
4,161,873 - +0.0
4,161,873 - -0.8
4,161,873 - -0.5
4,161,873 - +0.5
4,161,873 - +0.1
4,161,873 - -1.1
4,161,873 - -2.0
4,161,873 - -2.0
4,161,873 - -1.5
4,161,873 - -1.4
4,161,873 - -1.9
4,161,873 - -2.2
4,161,873 - -1.3
4,161,873 - -1.0
4,161,873 - -0.7
4,161,873 - -0.5
4,161,873 - -0.7
4,161,873 - +0.5
4,161,873 - -1.9
4,161,873 - -1.1
4,161,873 - -0.1
4,161,874 + -2.9
4,161,952 + -0.9
4,161,952 + +0.9
4,161,953 - -1.1
4,161,953 - -1.6
4,162,027 + Psest_3993 0.12 -1.0
4,162,027 + Psest_3993 0.12 -0.3
4,162,027 + Psest_3993 0.12 -2.2
4,162,027 + Psest_3993 0.12 +0.7
4,162,028 - Psest_3993 0.12 -1.3
4,162,028 - Psest_3993 0.12 -2.0
4,162,028 - Psest_3993 0.12 -1.9
4,162,028 - Psest_3993 0.12 +0.3
4,162,129 + Psest_3993 0.24 -0.1
4,162,129 + Psest_3993 0.24 -0.1
4,162,129 + Psest_3993 0.24 +0.9
4,162,129 + Psest_3993 0.24 -0.5
4,162,129 + Psest_3993 0.24 -1.1
4,162,130 - Psest_3993 0.24 -1.1
4,162,130 - Psest_3993 0.24 -1.4
4,162,130 - Psest_3993 0.24 -0.4
4,162,130 - Psest_3993 0.24 -1.8
4,162,130 - Psest_3993 0.24 +0.7
4,162,130 - Psest_3993 0.24 -0.4
4,162,450 + Psest_3993 0.59 -0.1
4,162,450 + Psest_3993 0.59 -0.8
4,162,450 + Psest_3993 0.59 -2.8
4,162,450 + Psest_3993 0.59 -1.3
4,162,450 + Psest_3993 0.59 -1.1
4,162,450 + Psest_3993 0.59 -0.9
4,162,450 + Psest_3993 0.59 +0.3
4,162,451 - Psest_3993 0.59 -1.9
4,162,451 - Psest_3993 0.59 +0.9
4,162,451 - Psest_3993 0.59 +0.1
4,162,451 - Psest_3993 0.59 -2.9
4,162,451 - Psest_3993 0.59 -1.3
4,162,451 - Psest_3993 0.59 -1.6
4,162,451 - Psest_3993 0.59 -1.7
4,162,451 - Psest_3993 0.59 -1.7
4,162,451 - Psest_3993 0.59 -3.0
4,163,108 + Psest_3994 0.20 -1.7
4,163,108 + Psest_3994 0.20 -2.1
4,163,109 - Psest_3994 0.20 -1.6
4,163,135 + Psest_3994 0.22 -2.7
4,163,135 + Psest_3994 0.22 +0.0
4,163,135 + Psest_3994 0.22 +0.7
4,163,135 + Psest_3994 0.22 +0.3
4,163,135 + Psest_3994 0.22 +0.2
4,163,135 + Psest_3994 0.22 +0.3
4,163,135 + Psest_3994 0.22 +0.5
4,163,135 + Psest_3994 0.22 -1.3
4,163,135 + Psest_3994 0.22 -1.4
4,163,135 + Psest_3994 0.22 -0.1
4,163,135 + Psest_3994 0.22 -0.1
4,163,135 + Psest_3994 0.22 -0.7
4,163,136 - Psest_3994 0.22 +0.4
4,163,136 - Psest_3994 0.22 +0.9
4,163,136 - Psest_3994 0.22 +0.3
4,163,136 - Psest_3994 0.22 -0.4
4,163,136 - Psest_3994 0.22 +0.3
4,163,136 - Psest_3994 0.22 -0.1
4,163,136 - Psest_3994 0.22 +0.1
4,163,136 - Psest_3994 0.22 -1.2
4,163,136 - Psest_3994 0.22 +1.3
4,163,136 - Psest_3994 0.22 +0.1
4,163,136 - Psest_3994 0.22 +0.4
4,163,279 + Psest_3994 0.33 -0.1
4,163,279 + Psest_3994 0.33 -0.5
4,163,279 + Psest_3994 0.33 +1.9
4,163,279 + Psest_3994 0.33 -0.1
4,163,768 + Psest_3994 0.69 -1.1
4,163,768 + Psest_3994 0.69 -1.2
4,163,768 + Psest_3994 0.69 -0.9
4,163,769 - Psest_3994 0.70 +1.6
4,163,769 - Psest_3994 0.70 +0.2
4,163,769 - Psest_3994 0.70 -0.7
4,163,769 - Psest_3994 0.70 +0.5
4,163,769 - Psest_3994 0.70 -0.0
4,163,769 - Psest_3994 0.70 +1.1
4,163,903 + Psest_3994 0.80 +0.9
4,163,904 - Psest_3994 0.80 +0.7
4,163,915 + Psest_3994 0.80 +0.2
4,164,077 + +0.4
4,164,077 + -0.0
4,164,078 - -0.0
4,164,078 - -0.9
4,164,279 + +0.3
4,164,367 + Psest_3995 0.16 -1.1
4,164,541 - Psest_3995 0.39 +0.2
4,164,664 - Psest_3995 0.56 -1.1
4,165,015 - +0.3
4,165,151 + +0.9
4,165,151 + -0.4
4,165,151 + -1.1
4,165,152 - +0.0
4,165,152 - +0.9

Or see this region's nucleotide sequence