Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0392 and Psest_0393 are separated by 1 nucleotides Psest_0393 and Psest_0394 overlap by 4 nucleotides Psest_0394 and Psest_0395 are separated by 2 nucleotides
Psest_0392: Psest_0392 - Signal transduction histidine kinase, at 419,764 to 423,273
_0392
Psest_0393: Psest_0393 - Methylase of chemotaxis methyl-accepting proteins, at 423,275 to 424,093
_0393
Psest_0394: Psest_0394 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 424,090 to 424,692
_0394
Psest_0395: Psest_0395 - His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 424,695 to 425,885
_0395
Position (kb) 423
424
425 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 422.695 kb on + strand, within Psest_0392 at 422.695 kb on + strand, within Psest_0392 at 422.696 kb on - strand, within Psest_0392 at 422.743 kb on + strand, within Psest_0392 at 422.743 kb on + strand, within Psest_0392 at 422.743 kb on + strand, within Psest_0392 at 422.744 kb on - strand, within Psest_0392 at 422.832 kb on + strand, within Psest_0392 at 423.196 kb on + strand at 423.197 kb on - strand at 423.197 kb on - strand at 423.197 kb on - strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.326 kb on + strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.327 kb on - strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.335 kb on + strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.336 kb on - strand at 423.341 kb on + strand at 423.342 kb on - strand at 423.356 kb on + strand at 423.357 kb on - strand, within Psest_0393 at 423.357 kb on - strand, within Psest_0393 at 423.522 kb on - strand, within Psest_0393 at 423.522 kb on - strand, within Psest_0393 at 423.522 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.547 kb on - strand, within Psest_0393 at 423.671 kb on + strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.672 kb on - strand, within Psest_0393 at 423.759 kb on - strand, within Psest_0393 at 423.798 kb on - strand, within Psest_0393 at 423.798 kb on - strand, within Psest_0393 at 423.798 kb on - strand, within Psest_0393 at 423.866 kb on - strand, within Psest_0393 at 423.886 kb on - strand, within Psest_0393 at 423.886 kb on - strand, within Psest_0393 at 423.886 kb on - strand, within Psest_0393 at 423.929 kb on + strand, within Psest_0393 at 423.929 kb on + strand, within Psest_0393 at 424.050 kb on - strand at 424.050 kb on - strand at 424.089 kb on + strand at 424.089 kb on + strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.090 kb on - strand at 424.247 kb on + strand, within Psest_0394 at 424.247 kb on + strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.248 kb on - strand, within Psest_0394 at 424.334 kb on + strand, within Psest_0394 at 424.335 kb on - strand, within Psest_0394 at 424.335 kb on - strand, within Psest_0394 at 424.351 kb on + strand, within Psest_0394 at 424.351 kb on + strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.352 kb on - strand, within Psest_0394 at 424.842 kb on + strand, within Psest_0395 at 424.870 kb on + strand, within Psest_0395 at 424.870 kb on + strand, within Psest_0395 at 424.870 kb on + strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.871 kb on - strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.980 kb on + strand, within Psest_0395 at 424.981 kb on - strand, within Psest_0395 at 424.981 kb on - strand, within Psest_0395 at 424.981 kb on - strand, within Psest_0395 at 425.079 kb on + strand, within Psest_0395 at 425.079 kb on + strand, within Psest_0395 at 425.080 kb on - strand, within Psest_0395
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 422,695 + Psest_0392 0.84 -2.2 422,695 + Psest_0392 0.84 -1.5 422,696 - Psest_0392 0.84 -0.5 422,743 + Psest_0392 0.85 -4.5 422,743 + Psest_0392 0.85 -2.9 422,743 + Psest_0392 0.85 -2.9 422,744 - Psest_0392 0.85 -0.5 422,832 + Psest_0392 0.87 -3.2 423,196 + -2.8 423,197 - +0.0 423,197 - -1.5 423,197 - -1.5 423,326 + -3.3 423,326 + -3.7 423,326 + -3.0 423,326 + -2.9 423,326 + -0.5 423,327 - -4.5 423,327 - -1.0 423,327 - -0.5 423,327 - -3.9 423,327 - -1.5 423,327 - -1.3 423,327 - -1.3 423,335 + +0.0 423,335 + -2.3 423,335 + -2.3 423,335 + -2.0 423,335 + -1.5 423,335 + -0.5 423,336 - -0.8 423,336 - -2.4 423,336 - +0.1 423,336 - -1.0 423,336 - +0.0 423,341 + -3.6 423,342 - -1.5 423,356 + -2.8 423,357 - Psest_0393 0.10 -1.0 423,357 - Psest_0393 0.10 -0.5 423,522 - Psest_0393 0.30 -2.5 423,522 - Psest_0393 0.30 -1.3 423,522 - Psest_0393 0.30 -2.9 423,547 - Psest_0393 0.33 -3.7 423,547 - Psest_0393 0.33 -1.5 423,547 - Psest_0393 0.33 -2.9 423,547 - Psest_0393 0.33 -1.3 423,671 + Psest_0393 0.48 -2.3 423,672 - Psest_0393 0.48 -2.0 423,672 - Psest_0393 0.48 -1.3 423,672 - Psest_0393 0.48 -0.5 423,672 - Psest_0393 0.48 -2.7 423,672 - Psest_0393 0.48 -3.2 423,672 - Psest_0393 0.48 -2.4 423,759 - Psest_0393 0.59 -1.5 423,798 - Psest_0393 0.64 -1.0 423,798 - Psest_0393 0.64 -1.0 423,798 - Psest_0393 0.64 -3.0 423,866 - Psest_0393 0.72 -1.0 423,886 - Psest_0393 0.75 -1.5 423,886 - Psest_0393 0.75 -1.0 423,886 - Psest_0393 0.75 -1.3 423,929 + Psest_0393 0.80 +0.0 423,929 + Psest_0393 0.80 -1.0 424,050 - -2.1 424,050 - -3.5 424,089 + -0.5 424,089 + +2.0 424,090 - +0.2 424,090 - -1.5 424,090 - -0.3 424,090 - +1.6 424,090 - +0.0 424,247 + Psest_0394 0.26 +1.0 424,247 + Psest_0394 0.26 +1.0 424,248 - Psest_0394 0.26 -1.0 424,248 - Psest_0394 0.26 -1.6 424,248 - Psest_0394 0.26 -2.1 424,248 - Psest_0394 0.26 -1.0 424,248 - Psest_0394 0.26 -0.3 424,248 - Psest_0394 0.26 -2.0 424,248 - Psest_0394 0.26 -1.3 424,248 - Psest_0394 0.26 +0.2 424,334 + Psest_0394 0.40 -0.5 424,335 - Psest_0394 0.41 -1.2 424,335 - Psest_0394 0.41 +0.3 424,351 + Psest_0394 0.43 +0.3 424,351 + Psest_0394 0.43 -0.5 424,352 - Psest_0394 0.43 -1.1 424,352 - Psest_0394 0.43 -1.5 424,352 - Psest_0394 0.43 -0.6 424,352 - Psest_0394 0.43 +0.0 424,352 - Psest_0394 0.43 -1.0 424,842 + Psest_0395 0.12 -0.7 424,870 + Psest_0395 0.15 +0.2 424,870 + Psest_0395 0.15 -2.4 424,870 + Psest_0395 0.15 +0.0 424,871 - Psest_0395 0.15 -0.8 424,871 - Psest_0395 0.15 -1.0 424,871 - Psest_0395 0.15 -1.8 424,871 - Psest_0395 0.15 -1.8 424,871 - Psest_0395 0.15 +0.1 424,980 + Psest_0395 0.24 -2.1 424,980 + Psest_0395 0.24 -0.1 424,980 + Psest_0395 0.24 -1.5 424,980 + Psest_0395 0.24 -1.8 424,981 - Psest_0395 0.24 -2.3 424,981 - Psest_0395 0.24 -1.4 424,981 - Psest_0395 0.24 -0.6 425,079 + Psest_0395 0.32 -1.2 425,079 + Psest_0395 0.32 -1.3 425,080 - Psest_0395 0.32 -2.9
Or see this region's nucleotide sequence