Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3912 and Psest_3913 are separated by 149 nucleotides Psest_3913 and Psest_3914 are separated by 307 nucleotides
Psest_3912: Psest_3912 - His Kinase A (phosphoacceptor) domain./HAMP domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 4,081,095 to 4,082,576
_3912
Psest_3913: Psest_3913 - hypothetical protein, at 4,082,726 to 4,083,118
_3913
Psest_3914: Psest_3914 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,083,426 to 4,084,319
_3914
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4082.158 kb on + strand, within Psest_3912 at 4082.158 kb on + strand, within Psest_3912 at 4082.159 kb on - strand, within Psest_3912 at 4082.159 kb on - strand, within Psest_3912 at 4082.164 kb on + strand, within Psest_3912 at 4082.164 kb on + strand, within Psest_3912 at 4082.191 kb on + strand, within Psest_3912 at 4082.192 kb on - strand, within Psest_3912 at 4082.192 kb on - strand, within Psest_3912 at 4082.270 kb on - strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.296 kb on + strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.297 kb on - strand, within Psest_3912 at 4082.302 kb on + strand, within Psest_3912 at 4082.302 kb on + strand, within Psest_3912 at 4082.302 kb on + strand, within Psest_3912 at 4082.303 kb on - strand, within Psest_3912 at 4082.303 kb on - strand, within Psest_3912 at 4082.303 kb on - strand, within Psest_3912 at 4082.312 kb on - strand, within Psest_3912 at 4082.400 kb on + strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.401 kb on - strand, within Psest_3912 at 4082.538 kb on + strand at 4082.539 kb on - strand at 4082.565 kb on + strand at 4082.566 kb on - strand at 4082.566 kb on - strand at 4082.566 kb on - strand at 4082.578 kb on + strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.587 kb on + strand at 4082.588 kb on - strand at 4082.656 kb on - strand at 4083.044 kb on + strand, within Psest_3913 at 4083.044 kb on + strand, within Psest_3913 at 4083.044 kb on + strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.341 kb on + strand at 4083.341 kb on + strand at 4083.342 kb on - strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.473 kb on - strand at 4083.473 kb on - strand at 4083.473 kb on - strand at 4083.688 kb on + strand, within Psest_3914 at 4083.688 kb on + strand, within Psest_3914 at 4083.745 kb on + strand, within Psest_3914 at 4083.746 kb on - strand, within Psest_3914 at 4083.991 kb on + strand, within Psest_3914 at 4083.992 kb on - strand, within Psest_3914 at 4084.029 kb on + strand, within Psest_3914 at 4084.029 kb on + strand, within Psest_3914 at 4084.029 kb on + strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.078 kb on + strand, within Psest_3914 at 4084.079 kb on - strand, within Psest_3914
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 4,082,158 + Psest_3912 0.72 -0.6 4,082,158 + Psest_3912 0.72 +0.0 4,082,159 - Psest_3912 0.72 -1.6 4,082,159 - Psest_3912 0.72 +0.6 4,082,164 + Psest_3912 0.72 -0.4 4,082,164 + Psest_3912 0.72 +1.2 4,082,191 + Psest_3912 0.74 +0.6 4,082,192 - Psest_3912 0.74 -1.6 4,082,192 - Psest_3912 0.74 +1.0 4,082,270 - Psest_3912 0.79 +1.6 4,082,296 + Psest_3912 0.81 -2.0 4,082,296 + Psest_3912 0.81 -0.9 4,082,296 + Psest_3912 0.81 -2.7 4,082,296 + Psest_3912 0.81 +2.0 4,082,296 + Psest_3912 0.81 -1.7 4,082,297 - Psest_3912 0.81 +0.5 4,082,297 - Psest_3912 0.81 +1.0 4,082,297 - Psest_3912 0.81 -0.8 4,082,297 - Psest_3912 0.81 -1.2 4,082,302 + Psest_3912 0.81 -2.0 4,082,302 + Psest_3912 0.81 -0.2 4,082,302 + Psest_3912 0.81 -1.0 4,082,303 - Psest_3912 0.82 +0.9 4,082,303 - Psest_3912 0.82 -1.2 4,082,303 - Psest_3912 0.82 +0.7 4,082,312 - Psest_3912 0.82 +1.0 4,082,400 + Psest_3912 0.88 -1.8 4,082,401 - Psest_3912 0.88 +0.0 4,082,401 - Psest_3912 0.88 +0.0 4,082,401 - Psest_3912 0.88 +0.0 4,082,401 - Psest_3912 0.88 -2.5 4,082,401 - Psest_3912 0.88 -0.3 4,082,401 - Psest_3912 0.88 -1.4 4,082,401 - Psest_3912 0.88 +1.0 4,082,401 - Psest_3912 0.88 -0.6 4,082,538 + -0.9 4,082,539 - -1.7 4,082,565 + -0.3 4,082,566 - -1.2 4,082,566 - -0.3 4,082,566 - +2.0 4,082,578 + +0.5 4,082,579 - +0.0 4,082,579 - +2.0 4,082,579 - +0.7 4,082,579 - +1.0 4,082,587 + -2.0 4,082,588 - +1.0 4,082,656 - +1.0 4,083,044 + Psest_3913 0.81 +1.5 4,083,044 + Psest_3913 0.81 +1.5 4,083,044 + Psest_3913 0.81 +0.3 4,083,045 - Psest_3913 0.81 -1.0 4,083,045 - Psest_3913 0.81 -1.3 4,083,045 - Psest_3913 0.81 -1.6 4,083,341 + -0.4 4,083,341 + +1.0 4,083,342 - +1.0 4,083,472 + +0.0 4,083,472 + +1.4 4,083,472 + +1.7 4,083,472 + +0.6 4,083,472 + +0.0 4,083,472 + +0.2 4,083,473 - -0.2 4,083,473 - -0.3 4,083,473 - +0.6 4,083,688 + Psest_3914 0.29 +0.0 4,083,688 + Psest_3914 0.29 +0.7 4,083,745 + Psest_3914 0.36 -1.6 4,083,746 - Psest_3914 0.36 +0.2 4,083,991 + Psest_3914 0.63 +0.4 4,083,992 - Psest_3914 0.63 +0.6 4,084,029 + Psest_3914 0.67 +0.7 4,084,029 + Psest_3914 0.67 +0.0 4,084,029 + Psest_3914 0.67 -0.9 4,084,030 - Psest_3914 0.68 +0.3 4,084,030 - Psest_3914 0.68 -1.0 4,084,030 - Psest_3914 0.68 +1.0 4,084,030 - Psest_3914 0.68 +0.5 4,084,030 - Psest_3914 0.68 +0.3 4,084,030 - Psest_3914 0.68 +0.7 4,084,030 - Psest_3914 0.68 +0.5 4,084,078 + Psest_3914 0.73 +0.1 4,084,079 - Psest_3914 0.73 +0.7
Or see this region's nucleotide sequence