Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3696 and Psest_3697 overlap by 4 nucleotides Psest_3697 and Psest_3698 overlap by 11 nucleotides Psest_3698 and Psest_3699 overlap by 14 nucleotides
Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686
_3696
Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294
_3697
Psest_3698: Psest_3698 - Predicted exporter, at 3,861,284 to 3,863,632
_3698
Psest_3699: Psest_3699 - Dehydrogenases (flavoproteins), at 3,863,619 to 3,864,869
_3699
Position (kb)
3861
3862
3863
3864 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3860.352 kb on - strand, within Psest_3696 at 3860.352 kb on - strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.454 kb on + strand, within Psest_3696 at 3860.454 kb on + strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.503 kb on - strand, within Psest_3696 at 3860.546 kb on + strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.805 kb on - strand, within Psest_3697 at 3861.198 kb on - strand, within Psest_3697 at 3861.198 kb on - strand, within Psest_3697 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.256 kb on + strand, within Psest_3698 at 3862.257 kb on - strand, within Psest_3698 at 3862.257 kb on - strand, within Psest_3698 at 3862.605 kb on + strand, within Psest_3698 at 3862.659 kb on + strand, within Psest_3698 at 3862.718 kb on + strand, within Psest_3698 at 3862.718 kb on + strand, within Psest_3698 at 3862.820 kb on + strand, within Psest_3698 at 3863.393 kb on + strand, within Psest_3698 at 3863.928 kb on + strand, within Psest_3699 at 3863.928 kb on + strand, within Psest_3699 at 3863.928 kb on + strand, within Psest_3699 at 3863.929 kb on - strand, within Psest_3699 at 3863.929 kb on - strand, within Psest_3699 at 3863.929 kb on - strand, within Psest_3699 at 3864.001 kb on - strand, within Psest_3699
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,860,352 - Psest_3696 0.21 +2.7 3,860,352 - Psest_3696 0.21 +1.1 3,860,360 + Psest_3696 0.23 +1.1 3,860,360 + Psest_3696 0.23 -0.0 3,860,360 + Psest_3696 0.23 +0.5 3,860,360 + Psest_3696 0.23 -1.4 3,860,361 - Psest_3696 0.23 +1.1 3,860,361 - Psest_3696 0.23 +1.1 3,860,361 - Psest_3696 0.23 +0.5 3,860,408 + Psest_3696 0.35 +0.8 3,860,408 + Psest_3696 0.35 -0.2 3,860,408 + Psest_3696 0.35 +0.1 3,860,408 + Psest_3696 0.35 -0.7 3,860,408 + Psest_3696 0.35 +1.1 3,860,409 - Psest_3696 0.35 +1.3 3,860,409 - Psest_3696 0.35 +0.8 3,860,409 - Psest_3696 0.35 -1.7 3,860,409 - Psest_3696 0.35 +1.1 3,860,454 + Psest_3696 0.45 +1.6 3,860,454 + Psest_3696 0.45 +0.4 3,860,455 - Psest_3696 0.46 +1.1 3,860,455 - Psest_3696 0.46 -1.7 3,860,455 - Psest_3696 0.46 +3.1 3,860,455 - Psest_3696 0.46 +1.1 3,860,455 - Psest_3696 0.46 -0.4 3,860,455 - Psest_3696 0.46 -1.5 3,860,465 + Psest_3696 0.48 +0.1 3,860,465 + Psest_3696 0.48 +0.4 3,860,465 + Psest_3696 0.48 -1.2 3,860,466 - Psest_3696 0.48 +1.1 3,860,466 - Psest_3696 0.48 +1.1 3,860,466 - Psest_3696 0.48 +1.2 3,860,466 - Psest_3696 0.48 +1.1 3,860,503 - Psest_3696 0.57 +1.1 3,860,546 + Psest_3696 0.67 +1.1 3,860,547 - Psest_3696 0.67 +1.7 3,860,547 - Psest_3696 0.67 -0.1 3,860,547 - Psest_3696 0.67 +0.1 3,860,547 - Psest_3696 0.67 +1.7 3,860,547 - Psest_3696 0.67 -1.2 3,860,805 - Psest_3697 0.20 +0.5 3,861,198 - Psest_3697 0.84 +3.4 3,861,198 - Psest_3697 0.84 +0.1 3,862,197 + Psest_3698 0.39 +2.1 3,862,197 + Psest_3698 0.39 +1.1 3,862,197 + Psest_3698 0.39 +0.4 3,862,197 + Psest_3698 0.39 +0.5 3,862,197 + Psest_3698 0.39 +0.3 3,862,256 + Psest_3698 0.41 +1.2 3,862,257 - Psest_3698 0.41 -0.5 3,862,257 - Psest_3698 0.41 +0.5 3,862,605 + Psest_3698 0.56 +1.1 3,862,659 + Psest_3698 0.59 +0.6 3,862,718 + Psest_3698 0.61 +1.1 3,862,718 + Psest_3698 0.61 +0.4 3,862,820 + Psest_3698 0.65 +3.1 3,863,393 + Psest_3698 0.90 +2.2 3,863,928 + Psest_3699 0.25 +2.4 3,863,928 + Psest_3699 0.25 +3.7 3,863,928 + Psest_3699 0.25 +0.1 3,863,929 - Psest_3699 0.25 +0.4 3,863,929 - Psest_3699 0.25 +1.1 3,863,929 - Psest_3699 0.25 +1.4 3,864,001 - Psest_3699 0.31 -0.7
Or see this region's nucleotide sequence