Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3698

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3696 and Psest_3697 overlap by 4 nucleotidesPsest_3697 and Psest_3698 overlap by 11 nucleotidesPsest_3698 and Psest_3699 overlap by 14 nucleotides Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686 _3696 Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294 _3697 Psest_3698: Psest_3698 - Predicted exporter, at 3,861,284 to 3,863,632 _3698 Psest_3699: Psest_3699 - Dehydrogenases (flavoproteins), at 3,863,619 to 3,864,869 _3699 Position (kb) 3861 3862 3863 3864Strain fitness (log2 ratio) -1 0 1 2 3at 3860.352 kb on - strand, within Psest_3696at 3860.352 kb on - strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.360 kb on + strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.361 kb on - strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.408 kb on + strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.409 kb on - strand, within Psest_3696at 3860.454 kb on + strand, within Psest_3696at 3860.454 kb on + strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.455 kb on - strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.465 kb on + strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.466 kb on - strand, within Psest_3696at 3860.503 kb on - strand, within Psest_3696at 3860.546 kb on + strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.547 kb on - strand, within Psest_3696at 3860.805 kb on - strand, within Psest_3697at 3861.198 kb on - strand, within Psest_3697at 3861.198 kb on - strand, within Psest_3697at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.197 kb on + strand, within Psest_3698at 3862.256 kb on + strand, within Psest_3698at 3862.257 kb on - strand, within Psest_3698at 3862.257 kb on - strand, within Psest_3698at 3862.605 kb on + strand, within Psest_3698at 3862.659 kb on + strand, within Psest_3698at 3862.718 kb on + strand, within Psest_3698at 3862.718 kb on + strand, within Psest_3698at 3862.820 kb on + strand, within Psest_3698at 3863.393 kb on + strand, within Psest_3698at 3863.928 kb on + strand, within Psest_3699at 3863.928 kb on + strand, within Psest_3699at 3863.928 kb on + strand, within Psest_3699at 3863.929 kb on - strand, within Psest_3699at 3863.929 kb on - strand, within Psest_3699at 3863.929 kb on - strand, within Psest_3699at 3864.001 kb on - strand, within Psest_3699

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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3,860,352 - Psest_3696 0.21 +2.7
3,860,352 - Psest_3696 0.21 +1.1
3,860,360 + Psest_3696 0.23 +1.1
3,860,360 + Psest_3696 0.23 -0.0
3,860,360 + Psest_3696 0.23 +0.5
3,860,360 + Psest_3696 0.23 -1.4
3,860,361 - Psest_3696 0.23 +1.1
3,860,361 - Psest_3696 0.23 +1.1
3,860,361 - Psest_3696 0.23 +0.5
3,860,408 + Psest_3696 0.35 +0.8
3,860,408 + Psest_3696 0.35 -0.2
3,860,408 + Psest_3696 0.35 +0.1
3,860,408 + Psest_3696 0.35 -0.7
3,860,408 + Psest_3696 0.35 +1.1
3,860,409 - Psest_3696 0.35 +1.3
3,860,409 - Psest_3696 0.35 +0.8
3,860,409 - Psest_3696 0.35 -1.7
3,860,409 - Psest_3696 0.35 +1.1
3,860,454 + Psest_3696 0.45 +1.6
3,860,454 + Psest_3696 0.45 +0.4
3,860,455 - Psest_3696 0.46 +1.1
3,860,455 - Psest_3696 0.46 -1.7
3,860,455 - Psest_3696 0.46 +3.1
3,860,455 - Psest_3696 0.46 +1.1
3,860,455 - Psest_3696 0.46 -0.4
3,860,455 - Psest_3696 0.46 -1.5
3,860,465 + Psest_3696 0.48 +0.1
3,860,465 + Psest_3696 0.48 +0.4
3,860,465 + Psest_3696 0.48 -1.2
3,860,466 - Psest_3696 0.48 +1.1
3,860,466 - Psest_3696 0.48 +1.1
3,860,466 - Psest_3696 0.48 +1.2
3,860,466 - Psest_3696 0.48 +1.1
3,860,503 - Psest_3696 0.57 +1.1
3,860,546 + Psest_3696 0.67 +1.1
3,860,547 - Psest_3696 0.67 +1.7
3,860,547 - Psest_3696 0.67 -0.1
3,860,547 - Psest_3696 0.67 +0.1
3,860,547 - Psest_3696 0.67 +1.7
3,860,547 - Psest_3696 0.67 -1.2
3,860,805 - Psest_3697 0.20 +0.5
3,861,198 - Psest_3697 0.84 +3.4
3,861,198 - Psest_3697 0.84 +0.1
3,862,197 + Psest_3698 0.39 +2.1
3,862,197 + Psest_3698 0.39 +1.1
3,862,197 + Psest_3698 0.39 +0.4
3,862,197 + Psest_3698 0.39 +0.5
3,862,197 + Psest_3698 0.39 +0.3
3,862,256 + Psest_3698 0.41 +1.2
3,862,257 - Psest_3698 0.41 -0.5
3,862,257 - Psest_3698 0.41 +0.5
3,862,605 + Psest_3698 0.56 +1.1
3,862,659 + Psest_3698 0.59 +0.6
3,862,718 + Psest_3698 0.61 +1.1
3,862,718 + Psest_3698 0.61 +0.4
3,862,820 + Psest_3698 0.65 +3.1
3,863,393 + Psest_3698 0.90 +2.2
3,863,928 + Psest_3699 0.25 +2.4
3,863,928 + Psest_3699 0.25 +3.7
3,863,928 + Psest_3699 0.25 +0.1
3,863,929 - Psest_3699 0.25 +0.4
3,863,929 - Psest_3699 0.25 +1.1
3,863,929 - Psest_3699 0.25 +1.4
3,864,001 - Psest_3699 0.31 -0.7

Or see this region's nucleotide sequence