Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3517 and Psest_3518 are separated by 241 nucleotides Psest_3518 and Psest_3519 are separated by 236 nucleotides Psest_3519 and Psest_3520 are separated by 111 nucleotides
Psest_3517: Psest_3517 - branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data) , at 3,694,196 to 3,697,666
_3517
Psest_3518: Psest_3518 - Transcriptional regulators, at 3,697,908 to 3,698,378
_3518
Psest_3519: Psest_3519 - Uncharacterized conserved protein, at 3,698,615 to 3,699,031
_3519
Psest_3520: Psest_3520 - Short chain fatty acids transporter, at 3,699,143 to 3,700,483
_3520
Position (kb)
3698
3699
3700 Strain fitness (log2 ratio)
-2
-1
0
1 at 3697.632 kb on + strand at 3697.678 kb on - strand at 3697.678 kb on - strand at 3697.678 kb on - strand at 3697.852 kb on - strand at 3697.925 kb on - strand at 3698.268 kb on + strand, within Psest_3518 at 3698.269 kb on - strand, within Psest_3518 at 3698.376 kb on + strand at 3698.377 kb on - strand at 3698.434 kb on - strand at 3698.477 kb on - strand at 3698.616 kb on + strand at 3698.616 kb on + strand at 3698.723 kb on + strand, within Psest_3519 at 3698.723 kb on + strand, within Psest_3519 at 3698.724 kb on - strand, within Psest_3519 at 3698.724 kb on - strand, within Psest_3519 at 3699.088 kb on - strand at 3699.117 kb on + strand at 3699.117 kb on + strand at 3699.118 kb on - strand at 3699.118 kb on - strand at 3699.118 kb on - strand at 3699.118 kb on - strand at 3699.173 kb on + strand at 3699.572 kb on + strand, within Psest_3520 at 3699.713 kb on + strand, within Psest_3520 at 3699.713 kb on + strand, within Psest_3520 at 3699.713 kb on + strand, within Psest_3520 at 3699.713 kb on + strand, within Psest_3520 at 3699.713 kb on + strand, within Psest_3520 at 3699.713 kb on + strand, within Psest_3520 at 3699.714 kb on - strand, within Psest_3520 at 3699.714 kb on - strand, within Psest_3520 at 3699.714 kb on - strand, within Psest_3520 at 3699.714 kb on - strand, within Psest_3520 at 3700.017 kb on - strand, within Psest_3520
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,697,632 + -1.9 3,697,678 - -0.3 3,697,678 - -1.3 3,697,678 - +0.3 3,697,852 - -1.9 3,697,925 - -1.8 3,698,268 + Psest_3518 0.76 -1.5 3,698,269 - Psest_3518 0.77 +0.3 3,698,376 + -1.5 3,698,377 - -1.5 3,698,434 - +0.2 3,698,477 - -0.3 3,698,616 + +0.1 3,698,616 + -0.5 3,698,723 + Psest_3519 0.26 -1.3 3,698,723 + Psest_3519 0.26 -2.2 3,698,724 - Psest_3519 0.26 +0.1 3,698,724 - Psest_3519 0.26 -1.4 3,699,088 - -0.8 3,699,117 + -0.3 3,699,117 + -0.1 3,699,118 - +0.8 3,699,118 - -1.5 3,699,118 - +0.5 3,699,118 - -0.5 3,699,173 + -0.3 3,699,572 + Psest_3520 0.32 +0.7 3,699,713 + Psest_3520 0.43 -0.9 3,699,713 + Psest_3520 0.43 -2.6 3,699,713 + Psest_3520 0.43 -0.3 3,699,713 + Psest_3520 0.43 -0.6 3,699,713 + Psest_3520 0.43 -1.8 3,699,713 + Psest_3520 0.43 -0.5 3,699,714 - Psest_3520 0.43 -0.6 3,699,714 - Psest_3520 0.43 +0.1 3,699,714 - Psest_3520 0.43 +0.3 3,699,714 - Psest_3520 0.43 +1.1 3,700,017 - Psest_3520 0.65 -0.9
Or see this region's nucleotide sequence