Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3438 and Psest_3439 are separated by 114 nucleotides Psest_3439 and Psest_3440 are separated by 95 nucleotides Psest_3440 and Psest_3441 overlap by 4 nucleotides
Psest_3438: Psest_3438 - Glutamate dehydrogenase/leucine dehydrogenase, at 3,607,811 to 3,609,148
_3438
Psest_3439: Psest_3439 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,609,263 to 3,610,039
_3439
Psest_3440: Psest_3440 - 16S RNA G1207 methylase RsmC, at 3,610,135 to 3,611,262
_3440
Psest_3441: Psest_3441 - Beta-lactamase class A, at 3,611,259 to 3,612,308
_3441
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3609.271 kb on - strand at 3609.271 kb on - strand at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.570 kb on + strand, within Psest_3439 at 3609.571 kb on - strand, within Psest_3439 at 3609.598 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.867 kb on + strand, within Psest_3439 at 3609.867 kb on + strand, within Psest_3439 at 3609.884 kb on - strand, within Psest_3439 at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.098 kb on + strand at 3610.098 kb on + strand at 3610.099 kb on - strand at 3610.140 kb on + strand at 3610.141 kb on - strand at 3610.232 kb on - strand at 3610.232 kb on - strand at 3610.404 kb on + strand, within Psest_3440 at 3610.404 kb on + strand, within Psest_3440 at 3610.404 kb on + strand, within Psest_3440 at 3610.404 kb on + strand, within Psest_3440 at 3610.404 kb on + strand, within Psest_3440 at 3610.405 kb on - strand, within Psest_3440 at 3610.405 kb on - strand, within Psest_3440 at 3610.405 kb on - strand, within Psest_3440 at 3610.405 kb on - strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.612 kb on + strand, within Psest_3440 at 3610.613 kb on - strand, within Psest_3440 at 3610.613 kb on - strand, within Psest_3440 at 3610.613 kb on - strand, within Psest_3440 at 3610.613 kb on - strand, within Psest_3440 at 3610.613 kb on - strand, within Psest_3440 at 3610.879 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.927 kb on + strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3610.928 kb on - strand, within Psest_3440 at 3611.144 kb on + strand, within Psest_3440 at 3611.144 kb on + strand, within Psest_3440 at 3611.145 kb on - strand, within Psest_3440 at 3611.261 kb on - strand at 3611.491 kb on + strand, within Psest_3441 at 3611.617 kb on + strand, within Psest_3441 at 3611.618 kb on - strand, within Psest_3441 at 3611.618 kb on - strand, within Psest_3441 at 3611.621 kb on - strand, within Psest_3441 at 3611.629 kb on + strand, within Psest_3441 at 3611.629 kb on + strand, within Psest_3441 at 3611.629 kb on + strand, within Psest_3441 at 3611.630 kb on - strand, within Psest_3441 at 3611.783 kb on - strand, within Psest_3441 at 3611.783 kb on - strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.784 kb on + strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.785 kb on - strand, within Psest_3441 at 3611.951 kb on - strand, within Psest_3441 at 3612.060 kb on + strand, within Psest_3441 at 3612.061 kb on - strand, within Psest_3441 at 3612.103 kb on + strand, within Psest_3441 at 3612.158 kb on + strand, within Psest_3441 at 3612.159 kb on - strand, within Psest_3441 at 3612.159 kb on - strand, within Psest_3441 at 3612.159 kb on - strand, within Psest_3441 at 3612.159 kb on - strand, within Psest_3441 at 3612.159 kb on - strand, within Psest_3441 at 3612.160 kb on + strand, within Psest_3441 at 3612.160 kb on + strand, within Psest_3441 at 3612.160 kb on + strand, within Psest_3441 at 3612.160 kb on + strand, within Psest_3441 at 3612.160 kb on + strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441 at 3612.161 kb on - strand, within Psest_3441
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,609,271 - +1.1 3,609,271 - +1.6 3,609,505 - Psest_3439 0.31 +0.9 3,609,505 - Psest_3439 0.31 +1.5 3,609,505 - Psest_3439 0.31 +0.5 3,609,505 - Psest_3439 0.31 +1.4 3,609,570 + Psest_3439 0.40 -1.4 3,609,571 - Psest_3439 0.40 +1.1 3,609,598 + Psest_3439 0.43 -0.9 3,609,600 + Psest_3439 0.43 -1.2 3,609,600 + Psest_3439 0.43 +0.1 3,609,600 + Psest_3439 0.43 -1.2 3,609,601 - Psest_3439 0.44 +0.5 3,609,601 - Psest_3439 0.44 +1.5 3,609,601 - Psest_3439 0.44 -0.5 3,609,601 - Psest_3439 0.44 +0.5 3,609,601 - Psest_3439 0.44 -0.2 3,609,867 + Psest_3439 0.78 -0.2 3,609,867 + Psest_3439 0.78 +0.6 3,609,884 - Psest_3439 0.80 +0.0 3,610,039 + -1.3 3,610,039 + +1.7 3,610,039 + -0.9 3,610,039 + +0.1 3,610,040 - -0.3 3,610,040 - +0.1 3,610,040 - +1.1 3,610,040 - -0.8 3,610,040 - -0.9 3,610,098 + +0.0 3,610,098 + -0.2 3,610,099 - +0.1 3,610,140 + +0.5 3,610,141 - +0.0 3,610,232 - -1.4 3,610,232 - -0.4 3,610,404 + Psest_3440 0.24 +0.1 3,610,404 + Psest_3440 0.24 +1.9 3,610,404 + Psest_3440 0.24 -0.9 3,610,404 + Psest_3440 0.24 -0.2 3,610,404 + Psest_3440 0.24 -0.2 3,610,405 - Psest_3440 0.24 +1.5 3,610,405 - Psest_3440 0.24 -0.9 3,610,405 - Psest_3440 0.24 -0.1 3,610,405 - Psest_3440 0.24 -0.8 3,610,612 + Psest_3440 0.42 +1.4 3,610,612 + Psest_3440 0.42 -1.1 3,610,612 + Psest_3440 0.42 +0.5 3,610,612 + Psest_3440 0.42 +0.7 3,610,612 + Psest_3440 0.42 +0.8 3,610,612 + Psest_3440 0.42 +0.6 3,610,612 + Psest_3440 0.42 +1.2 3,610,612 + Psest_3440 0.42 +1.1 3,610,612 + Psest_3440 0.42 +1.1 3,610,612 + Psest_3440 0.42 -0.2 3,610,613 - Psest_3440 0.42 +0.8 3,610,613 - Psest_3440 0.42 +0.3 3,610,613 - Psest_3440 0.42 +1.8 3,610,613 - Psest_3440 0.42 +0.5 3,610,613 - Psest_3440 0.42 +0.9 3,610,879 + Psest_3440 0.66 +0.5 3,610,927 + Psest_3440 0.70 +1.1 3,610,927 + Psest_3440 0.70 -0.2 3,610,927 + Psest_3440 0.70 +0.8 3,610,927 + Psest_3440 0.70 +1.5 3,610,927 + Psest_3440 0.70 +0.4 3,610,927 + Psest_3440 0.70 +0.5 3,610,927 + Psest_3440 0.70 +0.4 3,610,927 + Psest_3440 0.70 +0.8 3,610,927 + Psest_3440 0.70 +0.4 3,610,927 + Psest_3440 0.70 +1.2 3,610,927 + Psest_3440 0.70 +0.8 3,610,927 + Psest_3440 0.70 +0.9 3,610,927 + Psest_3440 0.70 +0.3 3,610,928 - Psest_3440 0.70 +0.3 3,610,928 - Psest_3440 0.70 +1.0 3,610,928 - Psest_3440 0.70 +0.1 3,610,928 - Psest_3440 0.70 +0.5 3,610,928 - Psest_3440 0.70 +0.1 3,610,928 - Psest_3440 0.70 +1.8 3,610,928 - Psest_3440 0.70 -0.2 3,610,928 - Psest_3440 0.70 +0.7 3,610,928 - Psest_3440 0.70 +1.1 3,610,928 - Psest_3440 0.70 +0.8 3,610,928 - Psest_3440 0.70 -0.2 3,610,928 - Psest_3440 0.70 -0.3 3,611,144 + Psest_3440 0.89 -1.2 3,611,144 + Psest_3440 0.89 +0.5 3,611,145 - Psest_3440 0.90 +2.4 3,611,261 - +0.5 3,611,491 + Psest_3441 0.22 -0.0 3,611,617 + Psest_3441 0.34 -0.5 3,611,618 - Psest_3441 0.34 +0.8 3,611,618 - Psest_3441 0.34 -0.5 3,611,621 - Psest_3441 0.34 -1.5 3,611,629 + Psest_3441 0.35 +0.1 3,611,629 + Psest_3441 0.35 -0.3 3,611,629 + Psest_3441 0.35 +2.1 3,611,630 - Psest_3441 0.35 +1.8 3,611,783 - Psest_3441 0.50 +1.1 3,611,783 - Psest_3441 0.50 -0.0 3,611,784 + Psest_3441 0.50 +2.1 3,611,784 + Psest_3441 0.50 +0.1 3,611,784 + Psest_3441 0.50 +0.1 3,611,784 + Psest_3441 0.50 +2.5 3,611,784 + Psest_3441 0.50 -1.2 3,611,784 + Psest_3441 0.50 +0.7 3,611,784 + Psest_3441 0.50 +0.1 3,611,784 + Psest_3441 0.50 +0.8 3,611,784 + Psest_3441 0.50 +1.2 3,611,784 + Psest_3441 0.50 -1.9 3,611,784 + Psest_3441 0.50 +0.1 3,611,784 + Psest_3441 0.50 -1.3 3,611,785 - Psest_3441 0.50 -0.1 3,611,785 - Psest_3441 0.50 +1.1 3,611,785 - Psest_3441 0.50 -0.5 3,611,785 - Psest_3441 0.50 +0.3 3,611,785 - Psest_3441 0.50 +0.3 3,611,785 - Psest_3441 0.50 -0.3 3,611,785 - Psest_3441 0.50 -0.5 3,611,785 - Psest_3441 0.50 -0.1 3,611,785 - Psest_3441 0.50 -1.9 3,611,785 - Psest_3441 0.50 +0.1 3,611,785 - Psest_3441 0.50 +0.1 3,611,785 - Psest_3441 0.50 +0.8 3,611,785 - Psest_3441 0.50 -0.2 3,611,785 - Psest_3441 0.50 +0.5 3,611,785 - Psest_3441 0.50 -0.7 3,611,785 - Psest_3441 0.50 -0.5 3,611,951 - Psest_3441 0.66 +0.6 3,612,060 + Psest_3441 0.76 -1.3 3,612,061 - Psest_3441 0.76 +2.3 3,612,103 + Psest_3441 0.80 +0.5 3,612,158 + Psest_3441 0.86 -1.3 3,612,159 - Psest_3441 0.86 +0.0 3,612,159 - Psest_3441 0.86 +0.9 3,612,159 - Psest_3441 0.86 +0.2 3,612,159 - Psest_3441 0.86 -0.4 3,612,159 - Psest_3441 0.86 -1.6 3,612,160 + Psest_3441 0.86 -0.7 3,612,160 + Psest_3441 0.86 -1.7 3,612,160 + Psest_3441 0.86 +0.5 3,612,160 + Psest_3441 0.86 +0.6 3,612,160 + Psest_3441 0.86 -0.5 3,612,161 - Psest_3441 0.86 +0.6 3,612,161 - Psest_3441 0.86 +0.5 3,612,161 - Psest_3441 0.86 +1.4 3,612,161 - Psest_3441 0.86 -0.0 3,612,161 - Psest_3441 0.86 +0.4 3,612,161 - Psest_3441 0.86 +0.1 3,612,161 - Psest_3441 0.86 -0.8 3,612,161 - Psest_3441 0.86 +0.3
Or see this region's nucleotide sequence