Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3434 and Psest_3435 are separated by 15 nucleotides Psest_3435 and Psest_3436 are separated by 17 nucleotides Psest_3436 and Psest_3437 are separated by 12 nucleotides
Psest_3434: Psest_3434 - Serine phosphatase RsbU, regulator of sigma subunit, at 3,603,802 to 3,605,793
_3434
Psest_3435: Psest_3435 - hypothetical protein, at 3,605,809 to 3,606,351
_3435
Psest_3436: Psest_3436 - Domain of unknown function (DUF1987)., at 3,606,369 to 3,606,746
_3436
Psest_3437: Psest_3437 - diguanylate cyclase (GGDEF) domain, at 3,606,759 to 3,607,544
_3437
Position (kb)
3605
3606
3607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3604.873 kb on + strand, within Psest_3434 at 3604.880 kb on + strand, within Psest_3434 at 3604.880 kb on + strand, within Psest_3434 at 3604.881 kb on - strand, within Psest_3434 at 3604.881 kb on - strand, within Psest_3434 at 3605.066 kb on - strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.176 kb on + strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.177 kb on - strand, within Psest_3434 at 3605.182 kb on + strand, within Psest_3434 at 3605.217 kb on - strand, within Psest_3434 at 3605.217 kb on - strand, within Psest_3434 at 3605.416 kb on + strand, within Psest_3434 at 3605.416 kb on + strand, within Psest_3434 at 3605.416 kb on + strand, within Psest_3434 at 3605.416 kb on + strand, within Psest_3434 at 3605.417 kb on - strand, within Psest_3434 at 3605.417 kb on - strand, within Psest_3434 at 3605.417 kb on - strand, within Psest_3434 at 3605.417 kb on - strand, within Psest_3434 at 3605.417 kb on - strand, within Psest_3434 at 3605.417 kb on - strand, within Psest_3434 at 3605.470 kb on + strand, within Psest_3434 at 3605.471 kb on - strand, within Psest_3434 at 3605.473 kb on + strand, within Psest_3434 at 3605.473 kb on + strand, within Psest_3434 at 3605.474 kb on - strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.587 kb on + strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.588 kb on - strand, within Psest_3434 at 3605.734 kb on + strand at 3605.746 kb on + strand at 3605.774 kb on + strand at 3605.774 kb on + strand at 3605.774 kb on + strand at 3605.774 kb on + strand at 3605.774 kb on + strand at 3605.774 kb on + strand at 3605.774 kb on + strand at 3605.775 kb on - strand at 3605.775 kb on - strand at 3605.775 kb on - strand at 3605.775 kb on - strand at 3605.775 kb on - strand at 3605.775 kb on - strand at 3605.775 kb on - strand at 3605.846 kb on - strand at 3605.910 kb on - strand, within Psest_3435 at 3605.910 kb on - strand, within Psest_3435 at 3605.929 kb on + strand, within Psest_3435 at 3605.929 kb on + strand, within Psest_3435 at 3605.929 kb on + strand, within Psest_3435 at 3605.930 kb on - strand, within Psest_3435 at 3605.930 kb on - strand, within Psest_3435 at 3605.930 kb on - strand, within Psest_3435 at 3605.930 kb on - strand, within Psest_3435 at 3605.930 kb on - strand, within Psest_3435 at 3605.984 kb on - strand, within Psest_3435 at 3606.013 kb on + strand, within Psest_3435 at 3606.014 kb on - strand, within Psest_3435 at 3606.088 kb on + strand, within Psest_3435 at 3606.089 kb on - strand, within Psest_3435 at 3606.089 kb on - strand, within Psest_3435 at 3606.193 kb on + strand, within Psest_3435 at 3606.194 kb on - strand, within Psest_3435 at 3606.194 kb on - strand, within Psest_3435 at 3606.474 kb on + strand, within Psest_3436 at 3606.474 kb on + strand, within Psest_3436 at 3606.475 kb on - strand, within Psest_3436 at 3606.495 kb on + strand, within Psest_3436 at 3606.495 kb on + strand, within Psest_3436 at 3606.496 kb on - strand, within Psest_3436 at 3606.496 kb on - strand, within Psest_3436 at 3606.496 kb on - strand, within Psest_3436 at 3606.496 kb on - strand, within Psest_3436 at 3606.496 kb on - strand, within Psest_3436 at 3606.561 kb on + strand, within Psest_3436 at 3606.562 kb on - strand, within Psest_3436 at 3606.562 kb on - strand, within Psest_3436 at 3606.562 kb on - strand, within Psest_3436 at 3606.562 kb on - strand, within Psest_3436 at 3606.621 kb on + strand, within Psest_3436 at 3606.657 kb on + strand, within Psest_3436 at 3606.657 kb on + strand, within Psest_3436 at 3606.658 kb on - strand, within Psest_3436 at 3606.658 kb on - strand, within Psest_3436 at 3606.758 kb on + strand at 3606.759 kb on - strand at 3606.759 kb on - strand at 3607.140 kb on + strand, within Psest_3437
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,604,873 + Psest_3434 0.54 +0.9 3,604,880 + Psest_3434 0.54 -0.2 3,604,880 + Psest_3434 0.54 +1.8 3,604,881 - Psest_3434 0.54 +0.6 3,604,881 - Psest_3434 0.54 +0.1 3,605,066 - Psest_3434 0.63 +0.8 3,605,176 + Psest_3434 0.69 +2.3 3,605,176 + Psest_3434 0.69 +2.1 3,605,176 + Psest_3434 0.69 +3.7 3,605,176 + Psest_3434 0.69 +2.1 3,605,176 + Psest_3434 0.69 +2.2 3,605,176 + Psest_3434 0.69 +3.6 3,605,176 + Psest_3434 0.69 +2.1 3,605,176 + Psest_3434 0.69 +2.6 3,605,176 + Psest_3434 0.69 +0.5 3,605,176 + Psest_3434 0.69 +1.7 3,605,176 + Psest_3434 0.69 +3.0 3,605,176 + Psest_3434 0.69 +0.9 3,605,176 + Psest_3434 0.69 +0.9 3,605,176 + Psest_3434 0.69 +2.3 3,605,176 + Psest_3434 0.69 +1.3 3,605,176 + Psest_3434 0.69 +1.4 3,605,176 + Psest_3434 0.69 +2.6 3,605,176 + Psest_3434 0.69 +0.7 3,605,176 + Psest_3434 0.69 +2.0 3,605,176 + Psest_3434 0.69 +2.1 3,605,176 + Psest_3434 0.69 +1.8 3,605,176 + Psest_3434 0.69 +2.2 3,605,177 - Psest_3434 0.69 +0.9 3,605,177 - Psest_3434 0.69 -0.5 3,605,177 - Psest_3434 0.69 -1.5 3,605,177 - Psest_3434 0.69 +1.0 3,605,177 - Psest_3434 0.69 +0.1 3,605,177 - Psest_3434 0.69 +0.8 3,605,177 - Psest_3434 0.69 +1.1 3,605,177 - Psest_3434 0.69 +1.4 3,605,177 - Psest_3434 0.69 +1.9 3,605,177 - Psest_3434 0.69 -0.5 3,605,177 - Psest_3434 0.69 +1.8 3,605,177 - Psest_3434 0.69 +1.3 3,605,177 - Psest_3434 0.69 +0.5 3,605,177 - Psest_3434 0.69 +0.2 3,605,177 - Psest_3434 0.69 +0.5 3,605,177 - Psest_3434 0.69 +0.8 3,605,177 - Psest_3434 0.69 -0.3 3,605,177 - Psest_3434 0.69 -1.5 3,605,182 + Psest_3434 0.69 +1.4 3,605,217 - Psest_3434 0.71 +0.5 3,605,217 - Psest_3434 0.71 +0.7 3,605,416 + Psest_3434 0.81 +2.1 3,605,416 + Psest_3434 0.81 +2.0 3,605,416 + Psest_3434 0.81 +1.9 3,605,416 + Psest_3434 0.81 +1.1 3,605,417 - Psest_3434 0.81 +1.3 3,605,417 - Psest_3434 0.81 +0.3 3,605,417 - Psest_3434 0.81 +0.4 3,605,417 - Psest_3434 0.81 +1.5 3,605,417 - Psest_3434 0.81 +0.2 3,605,417 - Psest_3434 0.81 +1.4 3,605,470 + Psest_3434 0.84 +1.0 3,605,471 - Psest_3434 0.84 +1.8 3,605,473 + Psest_3434 0.84 -0.1 3,605,473 + Psest_3434 0.84 -1.2 3,605,474 - Psest_3434 0.84 +1.7 3,605,587 + Psest_3434 0.90 -1.9 3,605,587 + Psest_3434 0.90 -1.0 3,605,587 + Psest_3434 0.90 +0.0 3,605,587 + Psest_3434 0.90 -1.0 3,605,587 + Psest_3434 0.90 +0.1 3,605,587 + Psest_3434 0.90 +0.4 3,605,587 + Psest_3434 0.90 +0.6 3,605,587 + Psest_3434 0.90 +0.0 3,605,587 + Psest_3434 0.90 -0.8 3,605,587 + Psest_3434 0.90 +0.9 3,605,587 + Psest_3434 0.90 -1.2 3,605,588 - Psest_3434 0.90 +0.8 3,605,588 - Psest_3434 0.90 +0.4 3,605,588 - Psest_3434 0.90 -0.5 3,605,588 - Psest_3434 0.90 +1.7 3,605,588 - Psest_3434 0.90 +0.8 3,605,588 - Psest_3434 0.90 +0.8 3,605,588 - Psest_3434 0.90 +1.5 3,605,588 - Psest_3434 0.90 +1.5 3,605,588 - Psest_3434 0.90 +0.5 3,605,734 + +0.6 3,605,746 + -0.4 3,605,774 + -0.3 3,605,774 + -0.7 3,605,774 + -2.9 3,605,774 + -1.1 3,605,774 + -0.5 3,605,774 + +0.3 3,605,774 + +0.4 3,605,775 - +1.4 3,605,775 - +0.9 3,605,775 - +0.3 3,605,775 - +0.0 3,605,775 - +1.3 3,605,775 - +0.9 3,605,775 - +0.4 3,605,846 - +0.5 3,605,910 - Psest_3435 0.19 -1.7 3,605,910 - Psest_3435 0.19 -0.3 3,605,929 + Psest_3435 0.22 -1.2 3,605,929 + Psest_3435 0.22 -2.5 3,605,929 + Psest_3435 0.22 +1.1 3,605,930 - Psest_3435 0.22 +0.5 3,605,930 - Psest_3435 0.22 -2.1 3,605,930 - Psest_3435 0.22 +0.4 3,605,930 - Psest_3435 0.22 +0.5 3,605,930 - Psest_3435 0.22 -0.3 3,605,984 - Psest_3435 0.32 +0.3 3,606,013 + Psest_3435 0.38 -1.2 3,606,014 - Psest_3435 0.38 -2.6 3,606,088 + Psest_3435 0.51 -1.2 3,606,089 - Psest_3435 0.52 -0.2 3,606,089 - Psest_3435 0.52 +0.1 3,606,193 + Psest_3435 0.71 -2.1 3,606,194 - Psest_3435 0.71 -1.1 3,606,194 - Psest_3435 0.71 -0.7 3,606,474 + Psest_3436 0.28 +1.1 3,606,474 + Psest_3436 0.28 +0.8 3,606,475 - Psest_3436 0.28 +0.4 3,606,495 + Psest_3436 0.33 -0.3 3,606,495 + Psest_3436 0.33 +0.7 3,606,496 - Psest_3436 0.34 +0.7 3,606,496 - Psest_3436 0.34 -0.5 3,606,496 - Psest_3436 0.34 -0.0 3,606,496 - Psest_3436 0.34 +0.4 3,606,496 - Psest_3436 0.34 -0.5 3,606,561 + Psest_3436 0.51 +1.1 3,606,562 - Psest_3436 0.51 -1.6 3,606,562 - Psest_3436 0.51 -1.7 3,606,562 - Psest_3436 0.51 +0.1 3,606,562 - Psest_3436 0.51 -0.1 3,606,621 + Psest_3436 0.67 +0.2 3,606,657 + Psest_3436 0.76 +0.1 3,606,657 + Psest_3436 0.76 -0.6 3,606,658 - Psest_3436 0.76 +1.1 3,606,658 - Psest_3436 0.76 +0.4 3,606,758 + +0.6 3,606,759 - -0.5 3,606,759 - +0.6 3,607,140 + Psest_3437 0.48 +1.4
Or see this region's nucleotide sequence