Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3381

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3380 and Psest_3381 are separated by 84 nucleotidesPsest_3381 and Psest_3382 are separated by 221 nucleotidesPsest_3382 and Psest_3383 are separated by 81 nucleotides Psest_3380: Psest_3380 - riboflavin kinase/FMN adenylyltransferase, at 3,550,920 to 3,551,870 _3380 Psest_3381: Psest_3381 - integral membrane protein MviN, at 3,551,955 to 3,553,502 _3381 Psest_3382: Psest_3382 - ribosomal protein S20, at 3,553,724 to 3,554,002 _3382 Psest_3383: Psest_3383 - Uncharacterized protein conserved in bacteria, at 3,554,084 to 3,554,548 _3383 Position (kb) 3551 3552 3553 3554Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3551.902 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.904 kb on - strandat 3551.964 kb on + strandat 3551.965 kb on - strandat 3551.965 kb on - strandat 3551.965 kb on - strandat 3551.965 kb on - strandat 3553.513 kb on - strandat 3553.513 kb on - strandat 3553.571 kb on + strandat 3553.572 kb on - strandat 3553.572 kb on - strandat 3554.000 kb on + strandat 3554.164 kb on - strand, within Psest_3383at 3554.164 kb on - strand, within Psest_3383at 3554.183 kb on - strand, within Psest_3383at 3554.228 kb on + strand, within Psest_3383at 3554.229 kb on - strand, within Psest_3383at 3554.385 kb on + strand, within Psest_3383at 3554.385 kb on + strand, within Psest_3383at 3554.386 kb on - strand, within Psest_3383at 3554.467 kb on + strand, within Psest_3383

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
remove
3,551,902 - +2.6
3,551,904 - +0.4
3,551,904 - -1.1
3,551,904 - +0.6
3,551,904 - +1.2
3,551,904 - +0.5
3,551,904 - -0.2
3,551,964 + -0.2
3,551,965 - -0.8
3,551,965 - -0.4
3,551,965 - -1.4
3,551,965 - -0.3
3,553,513 - -1.2
3,553,513 - -1.3
3,553,571 + -3.3
3,553,572 - -2.3
3,553,572 - -3.5
3,554,000 + +0.1
3,554,164 - Psest_3383 0.17 -1.1
3,554,164 - Psest_3383 0.17 -0.1
3,554,183 - Psest_3383 0.21 -1.5
3,554,228 + Psest_3383 0.31 -0.7
3,554,229 - Psest_3383 0.31 +0.7
3,554,385 + Psest_3383 0.65 +0.2
3,554,385 + Psest_3383 0.65 -0.5
3,554,386 - Psest_3383 0.65 +0.7
3,554,467 + Psest_3383 0.82 -0.9

Or see this region's nucleotide sequence