Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3313 and Psest_3314 are separated by 74 nucleotides Psest_3314 and Psest_3315 are separated by 7 nucleotides Psest_3315 and Psest_3316 are separated by 15 nucleotides
Psest_3313: Psest_3313 - RNA polymerase sigma-54 factor, at 3,476,690 to 3,478,198
_3313
Psest_3314: Psest_3314 - ribosomal subunit interface protein, at 3,478,273 to 3,478,581
_3314
Psest_3315: Psest_3315 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,478,589 to 3,479,053
_3315
Psest_3316: Psest_3316 - Predicted P-loop-containing kinase, at 3,479,069 to 3,479,926
_3316
Position (kb)
3478
3479 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3478.233 kb on + strand at 3478.266 kb on + strand at 3478.272 kb on + strand at 3478.307 kb on + strand, within Psest_3314 at 3478.307 kb on + strand, within Psest_3314 at 3478.307 kb on + strand, within Psest_3314 at 3478.327 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.550 kb on + strand, within Psest_3314 at 3478.550 kb on + strand, within Psest_3314 at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.127 kb on + strand at 3479.128 kb on - strand at 3479.128 kb on - strand at 3479.147 kb on + strand at 3479.147 kb on + strand at 3479.210 kb on - strand, within Psest_3316 at 3479.217 kb on + strand, within Psest_3316 at 3479.218 kb on - strand, within Psest_3316 at 3479.314 kb on + strand, within Psest_3316 at 3479.334 kb on - strand, within Psest_3316 at 3479.499 kb on + strand, within Psest_3316 at 3479.499 kb on + strand, within Psest_3316 at 3479.499 kb on + strand, within Psest_3316 at 3479.500 kb on - strand, within Psest_3316 at 3479.500 kb on - strand, within Psest_3316 at 3479.500 kb on - strand, within Psest_3316 at 3479.500 kb on - strand, within Psest_3316 at 3479.500 kb on - strand, within Psest_3316 at 3479.500 kb on - strand, within Psest_3316
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,478,233 + -2.0 3,478,266 + +0.5 3,478,272 + +2.3 3,478,307 + Psest_3314 0.11 +0.0 3,478,307 + Psest_3314 0.11 +2.3 3,478,307 + Psest_3314 0.11 +1.0 3,478,327 + Psest_3314 0.17 +0.9 3,478,483 + Psest_3314 0.68 +1.8 3,478,483 + Psest_3314 0.68 +0.2 3,478,483 + Psest_3314 0.68 -0.1 3,478,483 + Psest_3314 0.68 +1.7 3,478,483 + Psest_3314 0.68 +1.6 3,478,483 + Psest_3314 0.68 +0.8 3,478,483 + Psest_3314 0.68 +2.0 3,478,483 + Psest_3314 0.68 +0.8 3,478,483 + Psest_3314 0.68 -1.0 3,478,483 + Psest_3314 0.68 +1.2 3,478,483 + Psest_3314 0.68 +0.9 3,478,483 + Psest_3314 0.68 +0.5 3,478,483 + Psest_3314 0.68 +0.2 3,478,483 + Psest_3314 0.68 +1.1 3,478,483 + Psest_3314 0.68 +2.0 3,478,483 + Psest_3314 0.68 +0.2 3,478,483 + Psest_3314 0.68 +2.0 3,478,483 + Psest_3314 0.68 +1.1 3,478,483 + Psest_3314 0.68 +2.2 3,478,483 + Psest_3314 0.68 +0.5 3,478,483 + Psest_3314 0.68 +1.4 3,478,550 + Psest_3314 0.90 +0.8 3,478,550 + Psest_3314 0.90 +2.6 3,479,085 + +2.4 3,479,085 + +0.2 3,479,085 + -0.1 3,479,085 + +2.0 3,479,085 + +2.0 3,479,085 + +0.7 3,479,086 - +0.5 3,479,086 - +0.6 3,479,086 - +0.1 3,479,086 - +0.8 3,479,086 - -0.0 3,479,127 + -0.8 3,479,128 - +0.5 3,479,128 - +0.7 3,479,147 + -0.2 3,479,147 + +2.0 3,479,210 - Psest_3316 0.16 -0.8 3,479,217 + Psest_3316 0.17 +0.5 3,479,218 - Psest_3316 0.17 -0.4 3,479,314 + Psest_3316 0.29 +1.0 3,479,334 - Psest_3316 0.31 +1.0 3,479,499 + Psest_3316 0.50 -0.2 3,479,499 + Psest_3316 0.50 +0.0 3,479,499 + Psest_3316 0.50 +3.4 3,479,500 - Psest_3316 0.50 +1.0 3,479,500 - Psest_3316 0.50 +1.7 3,479,500 - Psest_3316 0.50 +1.5 3,479,500 - Psest_3316 0.50 +0.3 3,479,500 - Psest_3316 0.50 +0.7 3,479,500 - Psest_3316 0.50 -0.2
Or see this region's nucleotide sequence