Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3285

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3282 and Psest_3283 are separated by 69 nucleotidesPsest_3283 and Psest_3284 are separated by 33 nucleotidesPsest_3284 and Psest_3285 overlap by 4 nucleotidesPsest_3285 and Psest_3286 are separated by 142 nucleotides Psest_3282: Psest_3282 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 3,448,963 to 3,450,000 _3282 Psest_3283: Psest_3283 - Predicted membrane protein, at 3,450,070 to 3,450,747 _3283 Psest_3284: Psest_3284 - Uncharacterized protein conserved in bacteria, at 3,450,781 to 3,450,975 _3284 Psest_3285: Psest_3285 - dephospho-CoA kinase, at 3,450,972 to 3,451,580 _3285 Psest_3286: Psest_3286 - Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, at 3,451,723 to 3,452,592 _3286 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -2 -1 0 1 2at 3450.066 kb on - strandat 3450.110 kb on + strandat 3450.110 kb on + strandat 3450.125 kb on - strandat 3450.125 kb on - strandat 3450.125 kb on - strandat 3450.173 kb on + strand, within Psest_3283at 3450.280 kb on - strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.281 kb on + strand, within Psest_3283at 3450.282 kb on - strand, within Psest_3283at 3450.282 kb on - strand, within Psest_3283at 3450.282 kb on - strand, within Psest_3283at 3450.297 kb on + strand, within Psest_3283at 3450.297 kb on + strand, within Psest_3283at 3450.298 kb on - strand, within Psest_3283at 3450.298 kb on - strand, within Psest_3283at 3450.298 kb on - strand, within Psest_3283at 3450.396 kb on - strand, within Psest_3283at 3450.479 kb on + strand, within Psest_3283at 3450.479 kb on + strand, within Psest_3283at 3450.480 kb on - strand, within Psest_3283at 3450.491 kb on + strand, within Psest_3283at 3450.491 kb on + strand, within Psest_3283at 3450.492 kb on - strand, within Psest_3283at 3450.558 kb on - strand, within Psest_3283at 3450.563 kb on + strand, within Psest_3283at 3450.564 kb on - strand, within Psest_3283at 3450.614 kb on - strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.615 kb on + strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.616 kb on - strand, within Psest_3283at 3450.626 kb on + strand, within Psest_3283at 3450.627 kb on - strand, within Psest_3283at 3450.645 kb on + strand, within Psest_3283at 3450.645 kb on + strand, within Psest_3283at 3450.935 kb on - strand, within Psest_3284at 3451.620 kb on + strandat 3451.620 kb on + strandat 3451.620 kb on + strandat 3451.621 kb on - strandat 3451.623 kb on + strandat 3451.624 kb on - strandat 3451.657 kb on + strandat 3451.665 kb on - strandat 3451.685 kb on + strandat 3451.686 kb on - strandat 3451.745 kb on + strandat 3451.745 kb on + strandat 3451.746 kb on - strandat 3451.746 kb on - strandat 3451.861 kb on - strand, within Psest_3286at 3452.003 kb on + strand, within Psest_3286at 3452.004 kb on - strand, within Psest_3286at 3452.025 kb on - strand, within Psest_3286at 3452.079 kb on + strand, within Psest_3286at 3452.232 kb on - strand, within Psest_3286at 3452.232 kb on - strand, within Psest_3286at 3452.340 kb on + strand, within Psest_3286at 3452.341 kb on - strand, within Psest_3286at 3452.442 kb on - strand, within Psest_3286at 3452.457 kb on + strand, within Psest_3286at 3452.458 kb on - strand, within Psest_3286at 3452.479 kb on - strand, within Psest_3286at 3452.545 kb on + strandat 3452.545 kb on + strandat 3452.546 kb on - strandat 3452.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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3,450,066 - -0.2
3,450,110 + -0.4
3,450,110 + +0.3
3,450,125 - +0.4
3,450,125 - +1.4
3,450,125 - -0.6
3,450,173 + Psest_3283 0.15 +1.3
3,450,280 - Psest_3283 0.31 -1.3
3,450,281 + Psest_3283 0.31 -0.6
3,450,281 + Psest_3283 0.31 -0.3
3,450,281 + Psest_3283 0.31 +2.3
3,450,281 + Psest_3283 0.31 +0.0
3,450,281 + Psest_3283 0.31 +1.2
3,450,282 - Psest_3283 0.31 -1.8
3,450,282 - Psest_3283 0.31 +0.7
3,450,282 - Psest_3283 0.31 -1.7
3,450,297 + Psest_3283 0.33 +1.6
3,450,297 + Psest_3283 0.33 -0.0
3,450,298 - Psest_3283 0.34 -2.2
3,450,298 - Psest_3283 0.34 -1.1
3,450,298 - Psest_3283 0.34 -0.5
3,450,396 - Psest_3283 0.48 -1.4
3,450,479 + Psest_3283 0.60 -0.3
3,450,479 + Psest_3283 0.60 +1.3
3,450,480 - Psest_3283 0.60 -1.2
3,450,491 + Psest_3283 0.62 -0.7
3,450,491 + Psest_3283 0.62 +0.0
3,450,492 - Psest_3283 0.62 -1.1
3,450,558 - Psest_3283 0.72 -1.5
3,450,563 + Psest_3283 0.73 -0.8
3,450,564 - Psest_3283 0.73 -1.6
3,450,614 - Psest_3283 0.80 -2.3
3,450,615 + Psest_3283 0.80 -0.2
3,450,615 + Psest_3283 0.80 +1.2
3,450,615 + Psest_3283 0.80 +1.0
3,450,615 + Psest_3283 0.80 +1.1
3,450,615 + Psest_3283 0.80 -0.4
3,450,616 - Psest_3283 0.81 -1.5
3,450,616 - Psest_3283 0.81 -1.6
3,450,616 - Psest_3283 0.81 -1.2
3,450,616 - Psest_3283 0.81 -0.2
3,450,626 + Psest_3283 0.82 -1.5
3,450,627 - Psest_3283 0.82 -2.4
3,450,645 + Psest_3283 0.85 -0.5
3,450,645 + Psest_3283 0.85 +0.3
3,450,935 - Psest_3284 0.79 +0.7
3,451,620 + -1.3
3,451,620 + +0.3
3,451,620 + -1.0
3,451,621 - +0.0
3,451,623 + +0.8
3,451,624 - +1.2
3,451,657 + -0.6
3,451,665 - -0.8
3,451,685 + -0.5
3,451,686 - -0.9
3,451,745 + -2.2
3,451,745 + +0.7
3,451,746 - -0.9
3,451,746 - +2.6
3,451,861 - Psest_3286 0.16 -1.9
3,452,003 + Psest_3286 0.32 -1.7
3,452,004 - Psest_3286 0.32 -2.3
3,452,025 - Psest_3286 0.35 -1.3
3,452,079 + Psest_3286 0.41 +0.3
3,452,232 - Psest_3286 0.59 -2.3
3,452,232 - Psest_3286 0.59 -1.8
3,452,340 + Psest_3286 0.71 -0.6
3,452,341 - Psest_3286 0.71 -1.8
3,452,442 - Psest_3286 0.83 -2.0
3,452,457 + Psest_3286 0.84 -1.2
3,452,458 - Psest_3286 0.84 -2.2
3,452,479 - Psest_3286 0.87 -1.6
3,452,545 + -2.7
3,452,545 + -0.6
3,452,546 - -1.1
3,452,577 - -0.5

Or see this region's nucleotide sequence