Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3228

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3226 and Psest_3227 are separated by 85 nucleotidesPsest_3227 and Psest_3228 are separated by 22 nucleotidesPsest_3228 and Psest_3229 are separated by 129 nucleotides Psest_3226: Psest_3226 - Predicted membrane protein, at 3,398,158 to 3,398,745 _3226 Psest_3227: Psest_3227 - Predicted ester cyclase, at 3,398,831 to 3,399,274 _3227 Psest_3228: Psest_3228 - Zn-dependent protease with chaperone function, at 3,399,297 to 3,400,115 _3228 Psest_3229: Psest_3229 - Methyl-accepting chemotaxis protein, at 3,400,245 to 3,402,374 _3229 Position (kb) 3399 3400 3401Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3398.781 kb on - strandat 3398.869 kb on + strandat 3398.927 kb on + strand, within Psest_3227at 3398.927 kb on + strand, within Psest_3227at 3398.927 kb on + strand, within Psest_3227at 3398.927 kb on + strand, within Psest_3227at 3398.928 kb on - strand, within Psest_3227at 3398.928 kb on - strand, within Psest_3227at 3398.928 kb on - strand, within Psest_3227at 3398.928 kb on - strand, within Psest_3227at 3398.928 kb on - strand, within Psest_3227at 3398.928 kb on - strand, within Psest_3227at 3399.005 kb on - strand, within Psest_3227at 3399.067 kb on + strand, within Psest_3227at 3399.068 kb on - strand, within Psest_3227at 3399.068 kb on - strand, within Psest_3227at 3399.527 kb on + strand, within Psest_3228at 3399.548 kb on - strand, within Psest_3228at 3399.631 kb on + strand, within Psest_3228at 3399.631 kb on + strand, within Psest_3228at 3399.631 kb on + strand, within Psest_3228at 3399.632 kb on - strand, within Psest_3228at 3399.632 kb on - strand, within Psest_3228at 3399.632 kb on - strand, within Psest_3228at 3399.745 kb on + strand, within Psest_3228at 3399.745 kb on + strand, within Psest_3228at 3399.745 kb on + strand, within Psest_3228at 3399.746 kb on - strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.964 kb on + strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3399.965 kb on - strand, within Psest_3228at 3400.006 kb on + strand, within Psest_3228at 3400.006 kb on + strand, within Psest_3228at 3400.007 kb on + strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.007 kb on - strand, within Psest_3228at 3400.148 kb on - strandat 3400.187 kb on + strandat 3400.187 kb on + strandat 3400.187 kb on + strandat 3400.187 kb on + strandat 3400.187 kb on + strandat 3400.187 kb on + strandat 3400.188 kb on - strandat 3400.188 kb on - strandat 3400.188 kb on - strandat 3400.188 kb on - strandat 3400.238 kb on + strandat 3400.238 kb on + strandat 3400.238 kb on + strandat 3400.239 kb on - strandat 3400.239 kb on - strandat 3400.239 kb on - strandat 3400.239 kb on - strandat 3400.239 kb on - strandat 3400.239 kb on - strandat 3400.323 kb on + strandat 3400.324 kb on - strandat 3400.492 kb on + strand, within Psest_3229at 3400.493 kb on - strand, within Psest_3229at 3400.493 kb on - strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.611 kb on + strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.612 kb on - strand, within Psest_3229at 3400.656 kb on + strand, within Psest_3229at 3400.656 kb on + strand, within Psest_3229at 3400.656 kb on + strand, within Psest_3229at 3400.656 kb on + strand, within Psest_3229at 3400.657 kb on - strand, within Psest_3229at 3400.657 kb on - strand, within Psest_3229at 3400.657 kb on - strand, within Psest_3229at 3400.708 kb on - strand, within Psest_3229at 3400.708 kb on - strand, within Psest_3229at 3400.708 kb on - strand, within Psest_3229at 3400.797 kb on + strand, within Psest_3229at 3400.797 kb on + strand, within Psest_3229at 3400.798 kb on - strand, within Psest_3229at 3400.800 kb on + strand, within Psest_3229at 3400.800 kb on + strand, within Psest_3229at 3400.800 kb on + strand, within Psest_3229at 3400.800 kb on + strand, within Psest_3229at 3400.800 kb on + strand, within Psest_3229at 3400.801 kb on - strand, within Psest_3229at 3400.801 kb on - strand, within Psest_3229at 3400.801 kb on - strand, within Psest_3229at 3400.801 kb on - strand, within Psest_3229at 3400.801 kb on - strand, within Psest_3229at 3401.046 kb on + strand, within Psest_3229

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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3,398,781 - -1.9
3,398,869 + +0.8
3,398,927 + Psest_3227 0.22 +0.6
3,398,927 + Psest_3227 0.22 -0.5
3,398,927 + Psest_3227 0.22 +0.3
3,398,927 + Psest_3227 0.22 -0.1
3,398,928 - Psest_3227 0.22 -1.6
3,398,928 - Psest_3227 0.22 +0.4
3,398,928 - Psest_3227 0.22 +0.1
3,398,928 - Psest_3227 0.22 +0.1
3,398,928 - Psest_3227 0.22 -0.3
3,398,928 - Psest_3227 0.22 -0.3
3,399,005 - Psest_3227 0.39 +0.2
3,399,067 + Psest_3227 0.53 -0.0
3,399,068 - Psest_3227 0.53 -1.3
3,399,068 - Psest_3227 0.53 +0.0
3,399,527 + Psest_3228 0.28 -3.1
3,399,548 - Psest_3228 0.31 -2.3
3,399,631 + Psest_3228 0.41 +3.2
3,399,631 + Psest_3228 0.41 -2.9
3,399,631 + Psest_3228 0.41 -0.6
3,399,632 - Psest_3228 0.41 -0.9
3,399,632 - Psest_3228 0.41 +1.0
3,399,632 - Psest_3228 0.41 -1.6
3,399,745 + Psest_3228 0.55 -0.9
3,399,745 + Psest_3228 0.55 -2.4
3,399,745 + Psest_3228 0.55 -0.5
3,399,746 - Psest_3228 0.55 -3.0
3,399,964 + Psest_3228 0.81 -2.4
3,399,964 + Psest_3228 0.81 -2.3
3,399,964 + Psest_3228 0.81 -0.6
3,399,964 + Psest_3228 0.81 +1.0
3,399,964 + Psest_3228 0.81 -1.3
3,399,964 + Psest_3228 0.81 -1.3
3,399,964 + Psest_3228 0.81 -1.6
3,399,964 + Psest_3228 0.81 -0.9
3,399,964 + Psest_3228 0.81 -0.7
3,399,964 + Psest_3228 0.81 -0.6
3,399,964 + Psest_3228 0.81 -1.6
3,399,964 + Psest_3228 0.81 -1.6
3,399,964 + Psest_3228 0.81 -0.8
3,399,965 - Psest_3228 0.82 -1.8
3,399,965 - Psest_3228 0.82 -1.4
3,399,965 - Psest_3228 0.82 -1.3
3,399,965 - Psest_3228 0.82 -0.2
3,399,965 - Psest_3228 0.82 -2.8
3,399,965 - Psest_3228 0.82 -1.7
3,399,965 - Psest_3228 0.82 +0.4
3,399,965 - Psest_3228 0.82 -3.2
3,400,006 + Psest_3228 0.87 -0.2
3,400,006 + Psest_3228 0.87 -1.7
3,400,007 + Psest_3228 0.87 -2.2
3,400,007 - Psest_3228 0.87 -1.6
3,400,007 - Psest_3228 0.87 -3.2
3,400,007 - Psest_3228 0.87 -2.2
3,400,007 - Psest_3228 0.87 -3.0
3,400,007 - Psest_3228 0.87 -1.5
3,400,007 - Psest_3228 0.87 -3.7
3,400,007 - Psest_3228 0.87 -2.6
3,400,007 - Psest_3228 0.87 -2.2
3,400,007 - Psest_3228 0.87 -1.3
3,400,007 - Psest_3228 0.87 +0.5
3,400,007 - Psest_3228 0.87 -2.2
3,400,007 - Psest_3228 0.87 -0.8
3,400,007 - Psest_3228 0.87 -3.6
3,400,007 - Psest_3228 0.87 -4.2
3,400,007 - Psest_3228 0.87 -1.6
3,400,007 - Psest_3228 0.87 -0.4
3,400,148 - -1.3
3,400,187 + -0.1
3,400,187 + -0.7
3,400,187 + -0.6
3,400,187 + +0.2
3,400,187 + -0.6
3,400,187 + -1.2
3,400,188 - -0.8
3,400,188 - +0.7
3,400,188 - -0.2
3,400,188 - +1.1
3,400,238 + -1.4
3,400,238 + -0.3
3,400,238 + -2.6
3,400,239 - +0.9
3,400,239 - +0.1
3,400,239 - +1.0
3,400,239 - +0.5
3,400,239 - +0.8
3,400,239 - -0.2
3,400,323 + -0.6
3,400,324 - +0.7
3,400,492 + Psest_3229 0.12 -1.0
3,400,493 - Psest_3229 0.12 +1.7
3,400,493 - Psest_3229 0.12 -0.5
3,400,611 + Psest_3229 0.17 +0.6
3,400,611 + Psest_3229 0.17 +0.2
3,400,611 + Psest_3229 0.17 +0.6
3,400,611 + Psest_3229 0.17 -1.9
3,400,611 + Psest_3229 0.17 +0.1
3,400,611 + Psest_3229 0.17 +1.5
3,400,611 + Psest_3229 0.17 -0.9
3,400,611 + Psest_3229 0.17 -1.0
3,400,611 + Psest_3229 0.17 -0.3
3,400,611 + Psest_3229 0.17 -0.1
3,400,611 + Psest_3229 0.17 -1.0
3,400,611 + Psest_3229 0.17 +1.8
3,400,611 + Psest_3229 0.17 -0.0
3,400,611 + Psest_3229 0.17 +0.3
3,400,611 + Psest_3229 0.17 +1.2
3,400,611 + Psest_3229 0.17 -0.1
3,400,611 + Psest_3229 0.17 -0.2
3,400,611 + Psest_3229 0.17 -1.3
3,400,611 + Psest_3229 0.17 -0.1
3,400,611 + Psest_3229 0.17 +0.5
3,400,611 + Psest_3229 0.17 -0.3
3,400,611 + Psest_3229 0.17 -0.4
3,400,611 + Psest_3229 0.17 +0.4
3,400,612 - Psest_3229 0.17 +1.3
3,400,612 - Psest_3229 0.17 +1.3
3,400,612 - Psest_3229 0.17 -1.0
3,400,612 - Psest_3229 0.17 +0.8
3,400,612 - Psest_3229 0.17 +1.2
3,400,612 - Psest_3229 0.17 +2.1
3,400,612 - Psest_3229 0.17 +1.3
3,400,612 - Psest_3229 0.17 +0.7
3,400,612 - Psest_3229 0.17 +1.8
3,400,612 - Psest_3229 0.17 +1.8
3,400,612 - Psest_3229 0.17 +0.8
3,400,612 - Psest_3229 0.17 +1.3
3,400,612 - Psest_3229 0.17 +2.1
3,400,612 - Psest_3229 0.17 +1.1
3,400,612 - Psest_3229 0.17 +0.9
3,400,656 + Psest_3229 0.19 -2.3
3,400,656 + Psest_3229 0.19 -1.3
3,400,656 + Psest_3229 0.19 -0.6
3,400,656 + Psest_3229 0.19 -0.1
3,400,657 - Psest_3229 0.19 +1.2
3,400,657 - Psest_3229 0.19 +0.8
3,400,657 - Psest_3229 0.19 +1.5
3,400,708 - Psest_3229 0.22 +0.1
3,400,708 - Psest_3229 0.22 +1.0
3,400,708 - Psest_3229 0.22 +1.6
3,400,797 + Psest_3229 0.26 +0.6
3,400,797 + Psest_3229 0.26 -0.7
3,400,798 - Psest_3229 0.26 +1.0
3,400,800 + Psest_3229 0.26 -1.5
3,400,800 + Psest_3229 0.26 -0.9
3,400,800 + Psest_3229 0.26 -0.1
3,400,800 + Psest_3229 0.26 -0.2
3,400,800 + Psest_3229 0.26 +0.3
3,400,801 - Psest_3229 0.26 +1.1
3,400,801 - Psest_3229 0.26 +0.9
3,400,801 - Psest_3229 0.26 -0.8
3,400,801 - Psest_3229 0.26 +0.7
3,400,801 - Psest_3229 0.26 +1.9
3,401,046 + Psest_3229 0.38 -0.6

Or see this region's nucleotide sequence