Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3192 and Psest_3193 are separated by 195 nucleotides Psest_3193 and Psest_3194 are separated by 69 nucleotides Psest_3194 and Psest_3195 are separated by 86 nucleotides
Psest_3192: Psest_3192 - diguanylate cyclase (GGDEF) domain, at 3,363,963 to 3,365,093
_3192
Psest_3193: Psest_3193 - hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region, at 3,365,289 to 3,366,812
_3193
Psest_3194: Psest_3194 - Uncharacterized conserved protein (DUF2132)., at 3,366,882 to 3,367,103
_3194
Psest_3195: Psest_3195 - intracellular protease, PfpI family, at 3,367,190 to 3,367,771
_3195
Position (kb)
3365
3366
3367 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3364.438 kb on + strand, within Psest_3192 at 3364.439 kb on - strand, within Psest_3192 at 3364.439 kb on - strand, within Psest_3192 at 3364.654 kb on + strand, within Psest_3192 at 3364.654 kb on + strand, within Psest_3192 at 3364.654 kb on + strand, within Psest_3192 at 3364.654 kb on + strand, within Psest_3192 at 3364.655 kb on - strand, within Psest_3192 at 3364.655 kb on - strand, within Psest_3192 at 3364.655 kb on - strand, within Psest_3192 at 3364.655 kb on - strand, within Psest_3192 at 3364.657 kb on + strand, within Psest_3192 at 3364.657 kb on + strand, within Psest_3192 at 3364.759 kb on + strand, within Psest_3192 at 3364.760 kb on - strand, within Psest_3192 at 3364.760 kb on - strand, within Psest_3192 at 3364.807 kb on + strand, within Psest_3192 at 3364.807 kb on + strand, within Psest_3192 at 3364.807 kb on + strand, within Psest_3192 at 3364.808 kb on - strand, within Psest_3192 at 3364.808 kb on - strand, within Psest_3192 at 3364.808 kb on - strand, within Psest_3192 at 3364.808 kb on - strand, within Psest_3192 at 3364.808 kb on - strand, within Psest_3192 at 3364.963 kb on + strand, within Psest_3192 at 3364.963 kb on + strand, within Psest_3192 at 3365.011 kb on + strand at 3365.011 kb on + strand at 3365.012 kb on - strand at 3365.012 kb on - strand at 3365.046 kb on + strand at 3365.046 kb on + strand at 3365.047 kb on - strand at 3365.047 kb on - strand at 3365.094 kb on - strand at 3365.152 kb on + strand at 3365.152 kb on + strand at 3365.209 kb on + strand at 3365.209 kb on + strand at 3366.844 kb on + strand at 3367.030 kb on + strand, within Psest_3194 at 3367.095 kb on - strand at 3367.191 kb on + strand at 3367.191 kb on + strand at 3367.191 kb on + strand at 3367.192 kb on - strand at 3367.199 kb on - strand at 3367.314 kb on + strand, within Psest_3195 at 3367.314 kb on + strand, within Psest_3195 at 3367.314 kb on + strand, within Psest_3195 at 3367.315 kb on - strand, within Psest_3195 at 3367.315 kb on - strand, within Psest_3195 at 3367.315 kb on - strand, within Psest_3195 at 3367.315 kb on - strand, within Psest_3195 at 3367.315 kb on - strand, within Psest_3195 at 3367.401 kb on - strand, within Psest_3195 at 3367.401 kb on - strand, within Psest_3195 at 3367.469 kb on + strand, within Psest_3195 at 3367.469 kb on + strand, within Psest_3195 at 3367.469 kb on + strand, within Psest_3195 at 3367.469 kb on + strand, within Psest_3195 at 3367.470 kb on - strand, within Psest_3195 at 3367.470 kb on - strand, within Psest_3195 at 3367.470 kb on - strand, within Psest_3195 at 3367.470 kb on - strand, within Psest_3195 at 3367.470 kb on - strand, within Psest_3195 at 3367.491 kb on + strand, within Psest_3195 at 3367.491 kb on + strand, within Psest_3195 at 3367.491 kb on + strand, within Psest_3195 at 3367.492 kb on - strand, within Psest_3195 at 3367.530 kb on + strand, within Psest_3195 at 3367.531 kb on - strand, within Psest_3195 at 3367.596 kb on + strand, within Psest_3195 at 3367.597 kb on - strand, within Psest_3195 at 3367.597 kb on - strand, within Psest_3195 at 3367.722 kb on + strand at 3367.723 kb on - strand at 3367.723 kb on - strand at 3367.723 kb on - strand at 3367.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,364,438 + Psest_3192 0.42 +0.5 3,364,439 - Psest_3192 0.42 -0.1 3,364,439 - Psest_3192 0.42 +1.8 3,364,654 + Psest_3192 0.61 -0.2 3,364,654 + Psest_3192 0.61 -1.3 3,364,654 + Psest_3192 0.61 +0.1 3,364,654 + Psest_3192 0.61 -0.1 3,364,655 - Psest_3192 0.61 +0.9 3,364,655 - Psest_3192 0.61 +2.8 3,364,655 - Psest_3192 0.61 +2.4 3,364,655 - Psest_3192 0.61 +2.6 3,364,657 + Psest_3192 0.61 -0.8 3,364,657 + Psest_3192 0.61 -1.1 3,364,759 + Psest_3192 0.70 -0.2 3,364,760 - Psest_3192 0.70 +0.1 3,364,760 - Psest_3192 0.70 +1.0 3,364,807 + Psest_3192 0.75 -0.7 3,364,807 + Psest_3192 0.75 -0.6 3,364,807 + Psest_3192 0.75 +0.2 3,364,808 - Psest_3192 0.75 -0.1 3,364,808 - Psest_3192 0.75 +0.5 3,364,808 - Psest_3192 0.75 +0.7 3,364,808 - Psest_3192 0.75 +0.6 3,364,808 - Psest_3192 0.75 +2.1 3,364,963 + Psest_3192 0.88 +0.8 3,364,963 + Psest_3192 0.88 +1.8 3,365,011 + +1.3 3,365,011 + -0.6 3,365,012 - -1.2 3,365,012 - +1.1 3,365,046 + +0.5 3,365,046 + +0.1 3,365,047 - +0.1 3,365,047 - +0.5 3,365,094 - +0.9 3,365,152 + +1.0 3,365,152 + +0.7 3,365,209 + +2.1 3,365,209 + +2.0 3,366,844 + -1.0 3,367,030 + Psest_3194 0.67 +2.0 3,367,095 - +0.8 3,367,191 + -2.3 3,367,191 + -0.2 3,367,191 + +0.7 3,367,192 - +1.4 3,367,199 - +0.0 3,367,314 + Psest_3195 0.21 +1.0 3,367,314 + Psest_3195 0.21 +0.4 3,367,314 + Psest_3195 0.21 -0.9 3,367,315 - Psest_3195 0.21 +1.0 3,367,315 - Psest_3195 0.21 +0.8 3,367,315 - Psest_3195 0.21 +0.9 3,367,315 - Psest_3195 0.21 +1.0 3,367,315 - Psest_3195 0.21 +0.5 3,367,401 - Psest_3195 0.36 +0.9 3,367,401 - Psest_3195 0.36 +1.4 3,367,469 + Psest_3195 0.48 +0.3 3,367,469 + Psest_3195 0.48 +0.3 3,367,469 + Psest_3195 0.48 -1.8 3,367,469 + Psest_3195 0.48 +0.8 3,367,470 - Psest_3195 0.48 +0.3 3,367,470 - Psest_3195 0.48 +0.4 3,367,470 - Psest_3195 0.48 -1.2 3,367,470 - Psest_3195 0.48 +1.8 3,367,470 - Psest_3195 0.48 +0.1 3,367,491 + Psest_3195 0.52 +0.0 3,367,491 + Psest_3195 0.52 +0.3 3,367,491 + Psest_3195 0.52 +0.5 3,367,492 - Psest_3195 0.52 +1.3 3,367,530 + Psest_3195 0.58 +0.5 3,367,531 - Psest_3195 0.59 +0.0 3,367,596 + Psest_3195 0.70 -3.0 3,367,597 - Psest_3195 0.70 +0.0 3,367,597 - Psest_3195 0.70 +2.0 3,367,722 + -1.6 3,367,723 - -1.2 3,367,723 - +0.5 3,367,723 - -1.2 3,367,786 + -1.3
Or see this region's nucleotide sequence