Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3106 and Psest_3107 are separated by 34 nucleotides Psest_3107 and Psest_3108 are separated by 250 nucleotides Psest_3108 and Psest_3109 are separated by 156 nucleotides
Psest_3106: Psest_3106 - Predicted outer membrane protein, at 3,283,829 to 3,284,344
_3106
Psest_3107: Psest_3107 - uracil-DNA glycosylase, at 3,284,379 to 3,285,074
_3107
Psest_3108: Psest_3108 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 3,285,325 to 3,286,569
_3108
Psest_3109: Psest_3109 - Enoyl-CoA hydratase/carnithine racemase, at 3,286,726 to 3,287,544
_3109
Position (kb)
3285
3286
3287 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3284.502 kb on + strand, within Psest_3107 at 3284.503 kb on - strand, within Psest_3107 at 3284.503 kb on - strand, within Psest_3107 at 3284.572 kb on - strand, within Psest_3107 at 3284.682 kb on - strand, within Psest_3107 at 3284.791 kb on - strand, within Psest_3107 at 3284.808 kb on + strand, within Psest_3107 at 3284.821 kb on - strand, within Psest_3107 at 3285.002 kb on - strand, within Psest_3107 at 3285.002 kb on - strand, within Psest_3107 at 3285.002 kb on - strand, within Psest_3107 at 3285.002 kb on - strand, within Psest_3107 at 3285.002 kb on - strand, within Psest_3107 at 3285.080 kb on - strand at 3285.080 kb on - strand at 3285.080 kb on - strand at 3285.080 kb on - strand at 3285.080 kb on - strand at 3285.080 kb on - strand at 3285.183 kb on + strand at 3285.184 kb on - strand at 3285.184 kb on - strand at 3285.189 kb on + strand at 3285.190 kb on - strand at 3285.190 kb on - strand at 3285.190 kb on - strand at 3285.208 kb on + strand at 3285.208 kb on + strand at 3285.208 kb on + strand at 3285.208 kb on + strand at 3285.209 kb on - strand at 3285.209 kb on - strand at 3285.209 kb on - strand at 3285.209 kb on - strand at 3285.209 kb on - strand at 3285.240 kb on + strand at 3285.240 kb on + strand at 3285.240 kb on + strand at 3285.240 kb on + strand at 3285.241 kb on - strand at 3285.241 kb on - strand at 3285.289 kb on + strand at 3285.297 kb on + strand at 3285.298 kb on - strand at 3285.410 kb on - strand at 3285.410 kb on - strand at 3285.417 kb on + strand at 3285.427 kb on + strand at 3285.427 kb on + strand at 3285.427 kb on + strand at 3285.428 kb on - strand at 3285.428 kb on - strand at 3285.428 kb on - strand at 3285.428 kb on - strand at 3285.594 kb on - strand, within Psest_3108 at 3285.671 kb on - strand, within Psest_3108 at 3285.688 kb on + strand, within Psest_3108 at 3285.688 kb on + strand, within Psest_3108 at 3285.688 kb on + strand, within Psest_3108 at 3285.725 kb on - strand, within Psest_3108 at 3285.725 kb on - strand, within Psest_3108 at 3285.725 kb on - strand, within Psest_3108 at 3285.779 kb on - strand, within Psest_3108 at 3285.779 kb on - strand, within Psest_3108 at 3285.808 kb on + strand, within Psest_3108 at 3285.808 kb on + strand, within Psest_3108 at 3285.808 kb on + strand, within Psest_3108 at 3285.809 kb on - strand, within Psest_3108 at 3285.809 kb on - strand, within Psest_3108 at 3285.814 kb on + strand, within Psest_3108 at 3285.814 kb on + strand, within Psest_3108 at 3285.814 kb on + strand, within Psest_3108 at 3285.814 kb on + strand, within Psest_3108 at 3285.814 kb on + strand, within Psest_3108 at 3285.829 kb on + strand, within Psest_3108 at 3285.830 kb on - strand, within Psest_3108 at 3285.843 kb on + strand, within Psest_3108 at 3285.940 kb on + strand, within Psest_3108 at 3285.941 kb on - strand, within Psest_3108 at 3285.984 kb on - strand, within Psest_3108 at 3286.116 kb on + strand, within Psest_3108 at 3286.220 kb on - strand, within Psest_3108 at 3286.255 kb on + strand, within Psest_3108 at 3286.268 kb on - strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.345 kb on + strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.346 kb on - strand, within Psest_3108 at 3286.347 kb on + strand, within Psest_3108 at 3286.347 kb on + strand, within Psest_3108 at 3286.347 kb on + strand, within Psest_3108 at 3286.347 kb on + strand, within Psest_3108 at 3286.347 kb on + strand, within Psest_3108 at 3286.348 kb on - strand, within Psest_3108 at 3286.348 kb on - strand, within Psest_3108 at 3286.465 kb on + strand at 3286.465 kb on + strand at 3286.466 kb on - strand at 3286.557 kb on + strand at 3286.557 kb on + strand at 3286.562 kb on + strand at 3286.562 kb on + strand at 3286.562 kb on + strand at 3286.562 kb on + strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.563 kb on - strand at 3286.739 kb on + strand at 3286.740 kb on - strand at 3286.740 kb on - strand at 3286.906 kb on - strand, within Psest_3109 at 3286.906 kb on - strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.909 kb on + strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3286.910 kb on - strand, within Psest_3109 at 3287.297 kb on + strand, within Psest_3109 at 3287.297 kb on + strand, within Psest_3109 at 3287.297 kb on + strand, within Psest_3109 at 3287.298 kb on - strand, within Psest_3109 at 3287.340 kb on - strand, within Psest_3109 at 3287.431 kb on - strand, within Psest_3109 at 3287.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,284,502 + Psest_3107 0.18 -0.3 3,284,503 - Psest_3107 0.18 +1.0 3,284,503 - Psest_3107 0.18 +0.2 3,284,572 - Psest_3107 0.28 +0.1 3,284,682 - Psest_3107 0.44 +1.5 3,284,791 - Psest_3107 0.59 +0.0 3,284,808 + Psest_3107 0.62 +0.1 3,284,821 - Psest_3107 0.64 +0.1 3,285,002 - Psest_3107 0.90 -2.3 3,285,002 - Psest_3107 0.90 +0.0 3,285,002 - Psest_3107 0.90 -0.6 3,285,002 - Psest_3107 0.90 +0.8 3,285,002 - Psest_3107 0.90 -0.4 3,285,080 - +0.6 3,285,080 - +0.3 3,285,080 - -3.1 3,285,080 - -0.7 3,285,080 - +0.0 3,285,080 - -0.3 3,285,183 + -1.2 3,285,184 - +0.2 3,285,184 - -0.8 3,285,189 + -2.4 3,285,190 - +0.6 3,285,190 - -0.3 3,285,190 - +1.2 3,285,208 + -1.1 3,285,208 + +0.5 3,285,208 + -1.4 3,285,208 + +1.0 3,285,209 - +0.1 3,285,209 - +0.3 3,285,209 - -0.2 3,285,209 - +1.9 3,285,209 - +0.3 3,285,240 + -1.7 3,285,240 + -0.3 3,285,240 + -0.6 3,285,240 + +0.1 3,285,241 - +0.5 3,285,241 - +0.0 3,285,289 + -0.9 3,285,297 + -0.5 3,285,298 - -1.1 3,285,410 - -1.1 3,285,410 - -0.3 3,285,417 + -0.6 3,285,427 + -0.3 3,285,427 + -1.2 3,285,427 + +0.4 3,285,428 - -1.0 3,285,428 - +0.0 3,285,428 - +0.4 3,285,428 - -0.6 3,285,594 - Psest_3108 0.22 +1.4 3,285,671 - Psest_3108 0.28 +0.2 3,285,688 + Psest_3108 0.29 +0.7 3,285,688 + Psest_3108 0.29 -0.2 3,285,688 + Psest_3108 0.29 +0.2 3,285,725 - Psest_3108 0.32 +0.6 3,285,725 - Psest_3108 0.32 +0.1 3,285,725 - Psest_3108 0.32 +1.0 3,285,779 - Psest_3108 0.36 +0.5 3,285,779 - Psest_3108 0.36 +2.0 3,285,808 + Psest_3108 0.39 -1.8 3,285,808 + Psest_3108 0.39 -1.0 3,285,808 + Psest_3108 0.39 -0.9 3,285,809 - Psest_3108 0.39 +0.5 3,285,809 - Psest_3108 0.39 -0.6 3,285,814 + Psest_3108 0.39 -2.1 3,285,814 + Psest_3108 0.39 -0.7 3,285,814 + Psest_3108 0.39 -0.5 3,285,814 + Psest_3108 0.39 -0.6 3,285,814 + Psest_3108 0.39 -1.6 3,285,829 + Psest_3108 0.40 -0.2 3,285,830 - Psest_3108 0.41 -0.2 3,285,843 + Psest_3108 0.42 -2.1 3,285,940 + Psest_3108 0.49 +0.2 3,285,941 - Psest_3108 0.49 +0.3 3,285,984 - Psest_3108 0.53 -0.4 3,286,116 + Psest_3108 0.64 -0.1 3,286,220 - Psest_3108 0.72 +0.4 3,286,255 + Psest_3108 0.75 +0.5 3,286,268 - Psest_3108 0.76 -1.0 3,286,345 + Psest_3108 0.82 +1.4 3,286,345 + Psest_3108 0.82 +2.0 3,286,345 + Psest_3108 0.82 +1.0 3,286,345 + Psest_3108 0.82 +1.3 3,286,345 + Psest_3108 0.82 +1.3 3,286,345 + Psest_3108 0.82 +0.9 3,286,345 + Psest_3108 0.82 +0.3 3,286,346 - Psest_3108 0.82 -1.6 3,286,346 - Psest_3108 0.82 +1.3 3,286,346 - Psest_3108 0.82 -0.6 3,286,346 - Psest_3108 0.82 +1.2 3,286,346 - Psest_3108 0.82 +1.0 3,286,346 - Psest_3108 0.82 +0.4 3,286,346 - Psest_3108 0.82 -2.9 3,286,346 - Psest_3108 0.82 +1.4 3,286,347 + Psest_3108 0.82 +0.7 3,286,347 + Psest_3108 0.82 +0.7 3,286,347 + Psest_3108 0.82 +1.3 3,286,347 + Psest_3108 0.82 -0.4 3,286,347 + Psest_3108 0.82 +1.1 3,286,348 - Psest_3108 0.82 -0.2 3,286,348 - Psest_3108 0.82 +0.5 3,286,465 + +0.2 3,286,465 + +1.5 3,286,466 - +0.8 3,286,557 + +1.3 3,286,557 + +1.5 3,286,562 + +2.0 3,286,562 + +0.9 3,286,562 + +0.4 3,286,562 + +0.2 3,286,563 - -0.9 3,286,563 - +0.3 3,286,563 - -0.3 3,286,563 - -0.3 3,286,563 - -1.8 3,286,563 - +1.3 3,286,563 - +1.4 3,286,563 - +0.3 3,286,563 - -0.3 3,286,563 - +0.4 3,286,563 - -0.3 3,286,739 + +0.7 3,286,740 - +0.3 3,286,740 - +0.7 3,286,906 - Psest_3109 0.22 -3.0 3,286,906 - Psest_3109 0.22 +1.8 3,286,909 + Psest_3109 0.22 +0.9 3,286,909 + Psest_3109 0.22 -0.4 3,286,909 + Psest_3109 0.22 +0.3 3,286,909 + Psest_3109 0.22 +0.8 3,286,909 + Psest_3109 0.22 +1.6 3,286,909 + Psest_3109 0.22 +2.7 3,286,909 + Psest_3109 0.22 +1.7 3,286,909 + Psest_3109 0.22 +1.0 3,286,909 + Psest_3109 0.22 +0.0 3,286,909 + Psest_3109 0.22 +2.1 3,286,909 + Psest_3109 0.22 +0.5 3,286,909 + Psest_3109 0.22 -0.7 3,286,909 + Psest_3109 0.22 +0.2 3,286,909 + Psest_3109 0.22 +3.2 3,286,909 + Psest_3109 0.22 +0.5 3,286,909 + Psest_3109 0.22 +0.7 3,286,909 + Psest_3109 0.22 -1.4 3,286,910 - Psest_3109 0.22 -0.2 3,286,910 - Psest_3109 0.22 +0.3 3,286,910 - Psest_3109 0.22 +1.7 3,286,910 - Psest_3109 0.22 +0.3 3,286,910 - Psest_3109 0.22 +0.8 3,286,910 - Psest_3109 0.22 +1.4 3,286,910 - Psest_3109 0.22 +0.9 3,286,910 - Psest_3109 0.22 -0.6 3,286,910 - Psest_3109 0.22 +1.0 3,286,910 - Psest_3109 0.22 -0.4 3,286,910 - Psest_3109 0.22 -1.3 3,286,910 - Psest_3109 0.22 -0.4 3,286,910 - Psest_3109 0.22 -1.0 3,286,910 - Psest_3109 0.22 -2.3 3,286,910 - Psest_3109 0.22 +0.4 3,286,910 - Psest_3109 0.22 +0.9 3,286,910 - Psest_3109 0.22 +0.7 3,286,910 - Psest_3109 0.22 +0.8 3,286,910 - Psest_3109 0.22 +0.8 3,286,910 - Psest_3109 0.22 +0.5 3,287,297 + Psest_3109 0.70 -3.1 3,287,297 + Psest_3109 0.70 +1.0 3,287,297 + Psest_3109 0.70 -0.2 3,287,298 - Psest_3109 0.70 -0.7 3,287,340 - Psest_3109 0.75 +0.1 3,287,431 - Psest_3109 0.86 +0.2 3,287,551 - +0.0
Or see this region's nucleotide sequence