Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3061 and Psest_3063 are separated by 163 nucleotides Psest_3063 and Psest_3064 overlap by 4 nucleotides Psest_3064 and Psest_3065 are separated by 127 nucleotides Psest_3065 and Psest_3066 are separated by 76 nucleotides
Psest_3061: Psest_3061 - hypothetical protein, at 3,240,152 to 3,240,922
_3061
Psest_3063: Psest_3063 - hypothetical protein, at 3,241,086 to 3,241,229
_3063
Psest_3064: Psest_3064 - hypothetical protein, at 3,241,226 to 3,241,441
_3064
Psest_3065: Psest_3065 - hypothetical protein, at 3,241,569 to 3,241,844
_3065
Psest_3066: Psest_3066 - hypothetical protein, at 3,241,921 to 3,242,961
_3066
Position (kb)
3241
3242 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3240.363 kb on + strand, within Psest_3061 at 3240.364 kb on - strand, within Psest_3061 at 3240.364 kb on - strand, within Psest_3061 at 3240.449 kb on - strand, within Psest_3061 at 3240.459 kb on + strand, within Psest_3061 at 3240.473 kb on + strand, within Psest_3061 at 3240.473 kb on + strand, within Psest_3061 at 3240.506 kb on - strand, within Psest_3061 at 3240.579 kb on - strand, within Psest_3061 at 3240.602 kb on + strand, within Psest_3061 at 3240.602 kb on + strand, within Psest_3061 at 3240.602 kb on + strand, within Psest_3061 at 3240.603 kb on - strand, within Psest_3061 at 3240.603 kb on - strand, within Psest_3061 at 3240.603 kb on - strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.606 kb on + strand, within Psest_3061 at 3240.607 kb on - strand, within Psest_3061 at 3240.607 kb on - strand, within Psest_3061 at 3240.607 kb on - strand, within Psest_3061 at 3240.657 kb on + strand, within Psest_3061 at 3240.657 kb on + strand, within Psest_3061 at 3240.658 kb on - strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.659 kb on + strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.660 kb on - strand, within Psest_3061 at 3240.746 kb on + strand, within Psest_3061 at 3240.880 kb on - strand at 3241.211 kb on + strand, within Psest_3063 at 3241.211 kb on + strand, within Psest_3063 at 3241.213 kb on + strand, within Psest_3063 at 3241.213 kb on + strand, within Psest_3063 at 3241.213 kb on + strand, within Psest_3063 at 3241.213 kb on + strand, within Psest_3063 at 3241.213 kb on + strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.214 kb on - strand, within Psest_3063 at 3241.301 kb on + strand, within Psest_3064 at 3241.301 kb on + strand, within Psest_3064 at 3241.313 kb on + strand, within Psest_3064 at 3241.314 kb on - strand, within Psest_3064 at 3241.324 kb on - strand, within Psest_3064 at 3241.424 kb on + strand at 3241.424 kb on + strand at 3241.425 kb on - strand at 3241.425 kb on - strand at 3241.456 kb on + strand at 3241.456 kb on + strand at 3241.574 kb on + strand at 3241.588 kb on + strand at 3241.588 kb on + strand at 3241.588 kb on + strand at 3241.801 kb on - strand, within Psest_3065 at 3242.022 kb on - strand at 3242.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,240,363 + Psest_3061 0.27 -2.9 3,240,364 - Psest_3061 0.27 -0.6 3,240,364 - Psest_3061 0.27 -0.6 3,240,449 - Psest_3061 0.39 +0.9 3,240,459 + Psest_3061 0.40 -0.5 3,240,473 + Psest_3061 0.42 -0.9 3,240,473 + Psest_3061 0.42 -1.6 3,240,506 - Psest_3061 0.46 -0.8 3,240,579 - Psest_3061 0.55 -0.2 3,240,602 + Psest_3061 0.58 -0.5 3,240,602 + Psest_3061 0.58 -0.8 3,240,602 + Psest_3061 0.58 -0.0 3,240,603 - Psest_3061 0.58 +0.3 3,240,603 - Psest_3061 0.58 -0.2 3,240,603 - Psest_3061 0.58 +0.3 3,240,606 + Psest_3061 0.59 +1.3 3,240,606 + Psest_3061 0.59 -0.8 3,240,606 + Psest_3061 0.59 +0.0 3,240,606 + Psest_3061 0.59 -1.0 3,240,606 + Psest_3061 0.59 +0.3 3,240,607 - Psest_3061 0.59 -1.3 3,240,607 - Psest_3061 0.59 -3.0 3,240,607 - Psest_3061 0.59 -1.3 3,240,657 + Psest_3061 0.65 +0.8 3,240,657 + Psest_3061 0.65 +0.5 3,240,658 - Psest_3061 0.66 +0.2 3,240,659 + Psest_3061 0.66 +2.0 3,240,659 + Psest_3061 0.66 -0.4 3,240,659 + Psest_3061 0.66 +0.0 3,240,659 + Psest_3061 0.66 -0.4 3,240,659 + Psest_3061 0.66 +0.0 3,240,659 + Psest_3061 0.66 +0.3 3,240,659 + Psest_3061 0.66 +1.6 3,240,659 + Psest_3061 0.66 -1.1 3,240,659 + Psest_3061 0.66 -0.6 3,240,660 - Psest_3061 0.66 -1.2 3,240,660 - Psest_3061 0.66 -1.9 3,240,660 - Psest_3061 0.66 -0.8 3,240,660 - Psest_3061 0.66 -1.0 3,240,746 + Psest_3061 0.77 +0.7 3,240,880 - -1.0 3,241,211 + Psest_3063 0.87 -1.7 3,241,211 + Psest_3063 0.87 -1.8 3,241,213 + Psest_3063 0.88 -0.4 3,241,213 + Psest_3063 0.88 -2.1 3,241,213 + Psest_3063 0.88 -1.6 3,241,213 + Psest_3063 0.88 -1.1 3,241,213 + Psest_3063 0.88 -1.1 3,241,214 - Psest_3063 0.89 +0.0 3,241,214 - Psest_3063 0.89 -1.2 3,241,214 - Psest_3063 0.89 -0.5 3,241,214 - Psest_3063 0.89 -2.0 3,241,214 - Psest_3063 0.89 +0.0 3,241,214 - Psest_3063 0.89 +0.0 3,241,214 - Psest_3063 0.89 -0.0 3,241,301 + Psest_3064 0.35 -1.0 3,241,301 + Psest_3064 0.35 -1.6 3,241,313 + Psest_3064 0.40 +1.0 3,241,314 - Psest_3064 0.41 -3.1 3,241,324 - Psest_3064 0.45 -1.0 3,241,424 + -2.0 3,241,424 + -2.3 3,241,425 - +0.5 3,241,425 - +0.2 3,241,456 + -1.9 3,241,456 + -3.6 3,241,574 + -2.0 3,241,588 + -2.3 3,241,588 + +1.8 3,241,588 + +0.0 3,241,801 - Psest_3065 0.84 -0.6 3,242,022 - -0.2 3,242,022 - -1.2
Or see this region's nucleotide sequence