Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0301

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0300 and Psest_0301 are separated by 60 nucleotidesPsest_0301 and Psest_0302 are separated by 11 nucleotides Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848 _0300 Psest_0301: Psest_0301 - Methylase of chemotaxis methyl-accepting proteins, at 314,909 to 315,775 _0301 Psest_0302: Psest_0302 - Chemotaxis protein histidine kinase and related kinases, at 315,787 to 323,013 _0302 Position (kb) 314 315 316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 313.961 kb on + strand, within Psest_0300at 313.961 kb on + strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 314.190 kb on + strand, within Psest_0300at 314.200 kb on + strand, within Psest_0300at 314.201 kb on - strand, within Psest_0300at 314.210 kb on - strand, within Psest_0300at 314.336 kb on - strand, within Psest_0300at 314.372 kb on - strand, within Psest_0300at 314.557 kb on - strand, within Psest_0300at 314.743 kb on + strandat 314.951 kb on - strandat 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.205 kb on - strand, within Psest_0301at 315.215 kb on + strand, within Psest_0301at 315.215 kb on + strand, within Psest_0301at 315.215 kb on + strand, within Psest_0301at 315.216 kb on - strand, within Psest_0301at 315.219 kb on + strand, within Psest_0301at 315.219 kb on + strand, within Psest_0301at 315.220 kb on - strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.274 kb on - strand, within Psest_0301at 315.274 kb on - strand, within Psest_0301at 315.274 kb on - strand, within Psest_0301at 315.417 kb on - strand, within Psest_0301at 315.465 kb on - strand, within Psest_0301at 315.609 kb on - strand, within Psest_0301at 315.609 kb on - strand, within Psest_0301at 315.691 kb on - strandat 315.758 kb on - strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.806 kb on - strandat 315.849 kb on + strandat 315.849 kb on + strandat 315.849 kb on + strandat 315.849 kb on + strandat 315.849 kb on + strandat 315.850 kb on - strandat 315.925 kb on + strandat 315.925 kb on + strandat 315.925 kb on + strandat 315.925 kb on + strandat 315.925 kb on + strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 315.926 kb on - strandat 316.149 kb on - strandat 316.363 kb on + strandat 316.363 kb on + strandat 316.363 kb on + strandat 316.363 kb on + strandat 316.364 kb on - strandat 316.364 kb on - strandat 316.364 kb on - strandat 316.444 kb on - strandat 316.444 kb on - strandat 316.444 kb on - strandat 316.472 kb on + strandat 316.472 kb on + strandat 316.472 kb on + strandat 316.472 kb on + strandat 316.472 kb on + strandat 316.472 kb on + strandat 316.473 kb on - strandat 316.473 kb on - strandat 316.473 kb on - strandat 316.473 kb on - strandat 316.473 kb on - strandat 316.600 kb on + strand, within Psest_0302at 316.600 kb on + strand, within Psest_0302at 316.600 kb on + strand, within Psest_0302at 316.600 kb on + strand, within Psest_0302at 316.600 kb on + strand, within Psest_0302at 316.600 kb on + strand, within Psest_0302at 316.600 kb on + strand, within Psest_0302at 316.601 kb on - strand, within Psest_0302at 316.601 kb on - strand, within Psest_0302at 316.601 kb on - strand, within Psest_0302at 316.601 kb on - strand, within Psest_0302at 316.654 kb on + strand, within Psest_0302

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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313,961 + Psest_0300 0.57 -0.9
313,961 + Psest_0300 0.57 -0.6
313,962 - Psest_0300 0.57 -1.8
313,962 - Psest_0300 0.57 -2.0
313,962 - Psest_0300 0.57 -1.1
313,962 - Psest_0300 0.57 -1.8
314,190 + Psest_0300 0.68 -1.1
314,200 + Psest_0300 0.68 -1.3
314,201 - Psest_0300 0.68 -2.1
314,210 - Psest_0300 0.69 -1.7
314,336 - Psest_0300 0.75 -3.5
314,372 - Psest_0300 0.77 -4.2
314,557 - Psest_0300 0.86 -2.1
314,743 + -3.9
314,951 - -2.7
315,093 - Psest_0301 0.21 -1.8
315,093 - Psest_0301 0.21 -1.0
315,093 - Psest_0301 0.21 -0.9
315,093 - Psest_0301 0.21 -1.2
315,093 - Psest_0301 0.21 -0.8
315,205 - Psest_0301 0.34 -3.1
315,215 + Psest_0301 0.35 -0.8
315,215 + Psest_0301 0.35 -3.2
315,215 + Psest_0301 0.35 -0.3
315,216 - Psest_0301 0.35 -2.0
315,219 + Psest_0301 0.36 -1.1
315,219 + Psest_0301 0.36 -2.7
315,220 - Psest_0301 0.36 -1.8
315,273 + Psest_0301 0.42 -1.0
315,273 + Psest_0301 0.42 -1.7
315,273 + Psest_0301 0.42 -0.4
315,273 + Psest_0301 0.42 +0.0
315,273 + Psest_0301 0.42 -0.6
315,273 + Psest_0301 0.42 +1.0
315,274 - Psest_0301 0.42 -3.8
315,274 - Psest_0301 0.42 -0.7
315,274 - Psest_0301 0.42 -2.6
315,417 - Psest_0301 0.59 -1.0
315,465 - Psest_0301 0.64 -2.1
315,609 - Psest_0301 0.81 -1.6
315,609 - Psest_0301 0.81 -2.3
315,691 - -2.5
315,758 - -2.8
315,805 + -2.0
315,805 + -1.1
315,805 + -1.2
315,805 + -1.8
315,805 + -3.4
315,805 + +0.4
315,805 + -3.1
315,805 + -1.9
315,805 + -1.3
315,805 + -2.5
315,806 - -2.0
315,849 + -1.0
315,849 + -2.2
315,849 + -2.4
315,849 + -3.7
315,849 + -3.6
315,850 - -3.8
315,925 + -3.8
315,925 + -3.1
315,925 + -0.8
315,925 + -2.0
315,925 + -3.7
315,926 - -2.8
315,926 - -0.8
315,926 - -3.2
315,926 - -1.8
315,926 - -3.4
315,926 - -3.1
315,926 - -1.6
315,926 - -1.6
315,926 - -3.8
315,926 - -3.1
315,926 - -1.0
315,926 - -0.6
315,926 - -2.0
315,926 - -2.4
315,926 - -2.3
316,149 - -3.1
316,363 + -2.0
316,363 + -3.8
316,363 + -2.0
316,363 + -3.4
316,364 - -2.6
316,364 - -1.2
316,364 - -0.8
316,444 - -2.0
316,444 - +1.6
316,444 - -3.5
316,472 + -1.5
316,472 + +0.0
316,472 + -3.2
316,472 + -4.2
316,472 + -1.0
316,472 + -3.1
316,473 - -4.2
316,473 - -3.4
316,473 - -0.6
316,473 - -2.9
316,473 - -2.5
316,600 + Psest_0302 0.11 -2.6
316,600 + Psest_0302 0.11 -2.1
316,600 + Psest_0302 0.11 -2.8
316,600 + Psest_0302 0.11 -1.7
316,600 + Psest_0302 0.11 -2.6
316,600 + Psest_0302 0.11 -2.9
316,600 + Psest_0302 0.11 -4.0
316,601 - Psest_0302 0.11 -1.5
316,601 - Psest_0302 0.11 +0.2
316,601 - Psest_0302 0.11 -2.2
316,601 - Psest_0302 0.11 -1.7
316,654 + Psest_0302 0.12 -0.6

Or see this region's nucleotide sequence