Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0300

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0298 and Psest_0299 are separated by 41 nucleotidesPsest_0299 and Psest_0300 are separated by 76 nucleotidesPsest_0300 and Psest_0301 are separated by 60 nucleotidesPsest_0301 and Psest_0302 are separated by 11 nucleotides Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145 _0298 Psest_0299: Psest_0299 - Chemotaxis signal transduction protein, at 312,187 to 312,723 _0299 Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848 _0300 Psest_0301: Psest_0301 - Methylase of chemotaxis methyl-accepting proteins, at 314,909 to 315,775 _0301 Psest_0302: Psest_0302 - Chemotaxis protein histidine kinase and related kinases, at 315,787 to 323,013 _0302 Position (kb) 312 313 314 315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.926 kb on - strand, within Psest_0298at 312.080 kb on + strand, within Psest_0298at 312.081 kb on - strand, within Psest_0298at 312.232 kb on - strandat 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.707 kb on + strandat 312.708 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.811 kb on - strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.818 kb on - strandat 312.825 kb on + strandat 312.891 kb on + strandat 312.891 kb on + strandat 312.892 kb on - strandat 312.892 kb on - strandat 312.914 kb on + strandat 312.915 kb on - strandat 312.923 kb on - strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.975 kb on + strandat 312.976 kb on - strandat 312.976 kb on - strandat 313.083 kb on - strand, within Psest_0300at 313.186 kb on + strand, within Psest_0300at 313.218 kb on + strand, within Psest_0300at 313.218 kb on + strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.219 kb on - strand, within Psest_0300at 313.243 kb on + strand, within Psest_0300at 313.244 kb on - strand, within Psest_0300at 313.244 kb on - strand, within Psest_0300at 313.369 kb on + strand, within Psest_0300at 313.369 kb on + strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.370 kb on - strand, within Psest_0300at 313.383 kb on + strand, within Psest_0300at 313.429 kb on + strand, within Psest_0300at 313.430 kb on - strand, within Psest_0300at 313.465 kb on - strand, within Psest_0300at 313.569 kb on + strand, within Psest_0300at 313.570 kb on - strand, within Psest_0300at 313.570 kb on - strand, within Psest_0300at 313.639 kb on + strand, within Psest_0300at 313.639 kb on + strand, within Psest_0300at 313.639 kb on + strand, within Psest_0300at 313.640 kb on - strand, within Psest_0300at 313.640 kb on - strand, within Psest_0300at 313.961 kb on + strand, within Psest_0300at 313.961 kb on + strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 313.962 kb on - strand, within Psest_0300at 314.190 kb on + strand, within Psest_0300at 314.200 kb on + strand, within Psest_0300at 314.201 kb on - strand, within Psest_0300at 314.210 kb on - strand, within Psest_0300at 314.336 kb on - strand, within Psest_0300at 314.372 kb on - strand, within Psest_0300at 314.557 kb on - strand, within Psest_0300at 314.743 kb on + strandat 314.951 kb on - strandat 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.093 kb on - strand, within Psest_0301at 315.205 kb on - strand, within Psest_0301at 315.215 kb on + strand, within Psest_0301at 315.215 kb on + strand, within Psest_0301at 315.215 kb on + strand, within Psest_0301at 315.216 kb on - strand, within Psest_0301at 315.219 kb on + strand, within Psest_0301at 315.219 kb on + strand, within Psest_0301at 315.220 kb on - strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.273 kb on + strand, within Psest_0301at 315.274 kb on - strand, within Psest_0301at 315.274 kb on - strand, within Psest_0301at 315.274 kb on - strand, within Psest_0301at 315.417 kb on - strand, within Psest_0301at 315.465 kb on - strand, within Psest_0301at 315.609 kb on - strand, within Psest_0301at 315.609 kb on - strand, within Psest_0301at 315.691 kb on - strandat 315.758 kb on - strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.805 kb on + strandat 315.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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311,822 + Psest_0298 0.11 -1.8
311,822 + Psest_0298 0.11 -1.0
311,822 + Psest_0298 0.11 -2.2
311,822 + Psest_0298 0.11 -1.2
311,822 + Psest_0298 0.11 -3.5
311,822 + Psest_0298 0.11 -1.0
311,822 + Psest_0298 0.11 -0.5
311,822 + Psest_0298 0.11 -1.8
311,823 - Psest_0298 0.12 +0.0
311,823 - Psest_0298 0.12 +0.3
311,823 - Psest_0298 0.12 -3.3
311,823 - Psest_0298 0.12 -2.4
311,926 - Psest_0298 0.40 -0.6
312,080 + Psest_0298 0.82 -1.0
312,081 - Psest_0298 0.82 -1.3
312,232 - -2.9
312,630 + Psest_0299 0.82 +0.7
312,630 + Psest_0299 0.82 -1.9
312,630 + Psest_0299 0.82 +0.6
312,630 + Psest_0299 0.82 +0.0
312,630 + Psest_0299 0.82 -1.2
312,630 + Psest_0299 0.82 -1.0
312,630 + Psest_0299 0.82 -0.4
312,630 + Psest_0299 0.82 -1.8
312,630 + Psest_0299 0.82 -1.3
312,631 - Psest_0299 0.83 -2.7
312,631 - Psest_0299 0.83 -2.5
312,707 + -0.6
312,708 - +1.0
312,722 - -1.2
312,722 - -2.4
312,722 - -2.9
312,727 + -1.0
312,727 + +2.2
312,727 + -0.3
312,727 + -0.8
312,727 + +0.4
312,727 + +1.2
312,728 - -1.8
312,728 - -2.8
312,728 - -1.2
312,728 - -2.9
312,728 - -1.5
312,728 - -2.6
312,728 - -1.6
312,728 - -3.0
312,810 + -3.2
312,810 + -3.1
312,810 + -0.8
312,810 + -3.1
312,811 - -0.6
312,817 + -3.7
312,817 + -0.6
312,817 + -3.2
312,818 - +1.3
312,825 + -2.6
312,891 + -4.3
312,891 + +0.4
312,892 - -1.0
312,892 - -2.1
312,914 + -0.6
312,915 - -1.6
312,923 - -1.0
312,947 + -2.8
312,947 + -2.5
312,947 + -2.3
312,947 + -1.0
312,947 + +0.0
312,947 + -2.5
312,948 - -2.5
312,948 - -2.9
312,948 - -3.9
312,948 - -1.8
312,975 + +1.0
312,976 - -1.8
312,976 - -1.3
313,083 - Psest_0300 0.14 -2.0
313,186 + Psest_0300 0.19 +0.0
313,218 + Psest_0300 0.20 -2.6
313,218 + Psest_0300 0.20 -1.5
313,219 - Psest_0300 0.20 -2.2
313,219 - Psest_0300 0.20 -2.9
313,219 - Psest_0300 0.20 -1.3
313,219 - Psest_0300 0.20 -1.6
313,243 + Psest_0300 0.22 -3.1
313,244 - Psest_0300 0.22 -1.8
313,244 - Psest_0300 0.22 -1.6
313,369 + Psest_0300 0.28 -2.2
313,369 + Psest_0300 0.28 -1.0
313,370 - Psest_0300 0.28 -2.1
313,370 - Psest_0300 0.28 -1.8
313,370 - Psest_0300 0.28 -1.5
313,370 - Psest_0300 0.28 -0.4
313,383 + Psest_0300 0.28 -0.4
313,429 + Psest_0300 0.31 -1.5
313,430 - Psest_0300 0.31 -1.3
313,465 - Psest_0300 0.32 -1.6
313,569 + Psest_0300 0.38 -2.5
313,570 - Psest_0300 0.38 -4.0
313,570 - Psest_0300 0.38 -1.2
313,639 + Psest_0300 0.41 -3.2
313,639 + Psest_0300 0.41 -3.9
313,639 + Psest_0300 0.41 -2.5
313,640 - Psest_0300 0.41 -4.2
313,640 - Psest_0300 0.41 -1.1
313,961 + Psest_0300 0.57 -0.9
313,961 + Psest_0300 0.57 -0.6
313,962 - Psest_0300 0.57 -1.8
313,962 - Psest_0300 0.57 -2.0
313,962 - Psest_0300 0.57 -1.1
313,962 - Psest_0300 0.57 -1.8
314,190 + Psest_0300 0.68 -1.1
314,200 + Psest_0300 0.68 -1.3
314,201 - Psest_0300 0.68 -2.1
314,210 - Psest_0300 0.69 -1.7
314,336 - Psest_0300 0.75 -3.5
314,372 - Psest_0300 0.77 -4.2
314,557 - Psest_0300 0.86 -2.1
314,743 + -3.9
314,951 - -2.7
315,093 - Psest_0301 0.21 -1.8
315,093 - Psest_0301 0.21 -1.0
315,093 - Psest_0301 0.21 -0.9
315,093 - Psest_0301 0.21 -1.2
315,093 - Psest_0301 0.21 -0.8
315,205 - Psest_0301 0.34 -3.1
315,215 + Psest_0301 0.35 -0.8
315,215 + Psest_0301 0.35 -3.2
315,215 + Psest_0301 0.35 -0.3
315,216 - Psest_0301 0.35 -2.0
315,219 + Psest_0301 0.36 -1.1
315,219 + Psest_0301 0.36 -2.7
315,220 - Psest_0301 0.36 -1.8
315,273 + Psest_0301 0.42 -1.0
315,273 + Psest_0301 0.42 -1.7
315,273 + Psest_0301 0.42 -0.4
315,273 + Psest_0301 0.42 +0.0
315,273 + Psest_0301 0.42 -0.6
315,273 + Psest_0301 0.42 +1.0
315,274 - Psest_0301 0.42 -3.8
315,274 - Psest_0301 0.42 -0.7
315,274 - Psest_0301 0.42 -2.6
315,417 - Psest_0301 0.59 -1.0
315,465 - Psest_0301 0.64 -2.1
315,609 - Psest_0301 0.81 -1.6
315,609 - Psest_0301 0.81 -2.3
315,691 - -2.5
315,758 - -2.8
315,805 + -2.0
315,805 + -1.1
315,805 + -1.2
315,805 + -1.8
315,805 + -3.4
315,805 + +0.4
315,805 + -3.1
315,805 + -1.9
315,805 + -1.3
315,805 + -2.5
315,806 - -2.0

Or see this region's nucleotide sequence