Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0293 and Psest_0294 overlap by 4 nucleotides Psest_0294 and Psest_0295 are separated by 63 nucleotides Psest_0295 and Psest_0296 are separated by 87 nucleotides
Psest_0293: Psest_0293 - RNAse H-fold protein YqgF, at 308,103 to 308,531
_0293
Psest_0294: Psest_0294 - Putative transcriptional regulator, at 308,528 to 309,097
_0294
Psest_0295: Psest_0295 - TonB family C-terminal domain, at 309,161 to 310,054
_0295
Psest_0296: Psest_0296 - glutathione synthetase, prokaryotic, at 310,142 to 311,092
_0296
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.607 kb on + strand, within Psest_0294 at 309.006 kb on + strand, within Psest_0294 at 309.006 kb on + strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.104 kb on + strand at 309.104 kb on + strand at 309.109 kb on + strand at 310.257 kb on + strand, within Psest_0296 at 310.257 kb on + strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.258 kb on - strand, within Psest_0296 at 310.268 kb on + strand, within Psest_0296 at 310.491 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.791 kb on + strand, within Psest_0296 at 310.800 kb on + strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.801 kb on - strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.806 kb on + strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.807 kb on - strand, within Psest_0296 at 310.960 kb on - strand, within Psest_0296 at 310.978 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.980 kb on + strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296 at 310.981 kb on - strand, within Psest_0296
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 308,607 + Psest_0294 0.14 -2.3 309,006 + Psest_0294 0.84 -2.2 309,006 + Psest_0294 0.84 -0.6 309,007 - Psest_0294 0.84 +0.1 309,007 - Psest_0294 0.84 -0.8 309,007 - Psest_0294 0.84 -0.7 309,007 - Psest_0294 0.84 -0.1 309,007 - Psest_0294 0.84 -1.6 309,007 - Psest_0294 0.84 +0.0 309,007 - Psest_0294 0.84 -1.0 309,007 - Psest_0294 0.84 +0.5 309,104 + -2.9 309,104 + -1.2 309,109 + -1.6 310,257 + Psest_0296 0.12 +0.0 310,257 + Psest_0296 0.12 -2.0 310,258 - Psest_0296 0.12 +0.0 310,258 - Psest_0296 0.12 +1.3 310,258 - Psest_0296 0.12 +1.0 310,258 - Psest_0296 0.12 +1.5 310,268 + Psest_0296 0.13 -0.4 310,491 + Psest_0296 0.37 +0.4 310,791 + Psest_0296 0.68 -2.6 310,791 + Psest_0296 0.68 +1.7 310,791 + Psest_0296 0.68 +1.2 310,791 + Psest_0296 0.68 +0.0 310,800 + Psest_0296 0.69 -1.5 310,801 - Psest_0296 0.69 -1.3 310,801 - Psest_0296 0.69 +0.0 310,801 - Psest_0296 0.69 +0.7 310,801 - Psest_0296 0.69 -0.2 310,806 + Psest_0296 0.70 -0.5 310,806 + Psest_0296 0.70 +0.2 310,806 + Psest_0296 0.70 -1.3 310,806 + Psest_0296 0.70 -0.6 310,806 + Psest_0296 0.70 -1.5 310,806 + Psest_0296 0.70 -0.7 310,807 - Psest_0296 0.70 +1.0 310,807 - Psest_0296 0.70 -1.2 310,807 - Psest_0296 0.70 +0.4 310,960 - Psest_0296 0.86 +1.8 310,978 + Psest_0296 0.88 -2.0 310,980 + Psest_0296 0.88 +0.1 310,980 + Psest_0296 0.88 -2.4 310,980 + Psest_0296 0.88 -1.2 310,980 + Psest_0296 0.88 -1.2 310,980 + Psest_0296 0.88 -1.6 310,980 + Psest_0296 0.88 -1.6 310,980 + Psest_0296 0.88 -2.3 310,981 - Psest_0296 0.88 +0.3 310,981 - Psest_0296 0.88 +0.4 310,981 - Psest_0296 0.88 +0.4 310,981 - Psest_0296 0.88 -0.1 310,981 - Psest_0296 0.88 -1.1 310,981 - Psest_0296 0.88 -0.6 310,981 - Psest_0296 0.88 +0.9 310,981 - Psest_0296 0.88 +2.3 310,981 - Psest_0296 0.88 +0.0 310,981 - Psest_0296 0.88 +0.3 310,981 - Psest_0296 0.88 -1.0
Or see this region's nucleotide sequence