Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2969 and Psest_2970 are separated by 34 nucleotides Psest_2970 and Psest_2971 are separated by 79 nucleotides Psest_2971 and Psest_2972 are separated by 113 nucleotides
Psest_2969: Psest_2969 - Methylase of chemotaxis methyl-accepting proteins, at 3,164,454 to 3,165,278
_2969
Psest_2970: Psest_2970 - Chemotaxis signal transduction protein, at 3,165,313 to 3,166,245
_2970
Psest_2971: Psest_2971 - flagella basal body P-ring formation protein FlgA, at 3,166,325 to 3,167,077
_2971
Psest_2972: Psest_2972 - flagellar biosynthesis anti-sigma factor FlgM, at 3,167,191 to 3,167,520
_2972
Position (kb)
3165
3166
3167 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3164.319 kb on + strand at 3164.338 kb on + strand at 3164.348 kb on - strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.501 kb on - strand at 3164.614 kb on + strand, within Psest_2969 at 3164.614 kb on + strand, within Psest_2969 at 3164.614 kb on + strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.665 kb on + strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.756 kb on - strand, within Psest_2969 at 3164.903 kb on - strand, within Psest_2969 at 3164.930 kb on - strand, within Psest_2969 at 3165.196 kb on + strand at 3165.196 kb on + strand at 3165.196 kb on + strand at 3165.197 kb on - strand at 3165.197 kb on - strand at 3165.197 kb on - strand at 3165.197 kb on - strand at 3165.283 kb on - strand at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.444 kb on + strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.445 kb on - strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.454 kb on + strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.455 kb on - strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.456 kb on + strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.457 kb on - strand, within Psest_2970 at 3165.506 kb on + strand, within Psest_2970 at 3165.507 kb on - strand, within Psest_2970 at 3165.507 kb on - strand, within Psest_2970 at 3165.507 kb on - strand, within Psest_2970 at 3165.532 kb on - strand, within Psest_2970 at 3165.597 kb on - strand, within Psest_2970 at 3165.643 kb on + strand, within Psest_2970 at 3165.644 kb on - strand, within Psest_2970 at 3165.645 kb on + strand, within Psest_2970 at 3165.646 kb on - strand, within Psest_2970 at 3165.646 kb on - strand, within Psest_2970 at 3165.646 kb on - strand, within Psest_2970 at 3165.646 kb on - strand, within Psest_2970 at 3165.851 kb on + strand, within Psest_2970 at 3165.956 kb on + strand, within Psest_2970 at 3165.956 kb on + strand, within Psest_2970 at 3165.956 kb on + strand, within Psest_2970 at 3165.957 kb on - strand, within Psest_2970 at 3165.957 kb on - strand, within Psest_2970 at 3165.957 kb on - strand, within Psest_2970 at 3165.957 kb on - strand, within Psest_2970 at 3165.957 kb on - strand, within Psest_2970 at 3166.041 kb on + strand, within Psest_2970 at 3166.042 kb on - strand, within Psest_2970 at 3166.042 kb on - strand, within Psest_2970 at 3166.042 kb on - strand, within Psest_2970 at 3166.042 kb on - strand, within Psest_2970 at 3166.135 kb on + strand, within Psest_2970 at 3166.135 kb on + strand, within Psest_2970 at 3166.136 kb on - strand, within Psest_2970 at 3166.148 kb on + strand, within Psest_2970 at 3166.234 kb on + strand at 3166.235 kb on - strand at 3166.272 kb on - strand at 3166.272 kb on - strand at 3166.272 kb on - strand at 3166.272 kb on - strand at 3166.289 kb on + strand at 3166.292 kb on + strand at 3166.293 kb on - strand at 3166.336 kb on + strand at 3166.336 kb on + strand at 3166.337 kb on - strand at 3166.337 kb on - strand at 3166.450 kb on + strand, within Psest_2971 at 3166.485 kb on + strand, within Psest_2971 at 3166.494 kb on - strand, within Psest_2971 at 3166.494 kb on - strand, within Psest_2971 at 3166.494 kb on - strand, within Psest_2971 at 3166.494 kb on - strand, within Psest_2971 at 3166.497 kb on + strand, within Psest_2971 at 3166.497 kb on + strand, within Psest_2971 at 3166.497 kb on + strand, within Psest_2971 at 3166.498 kb on - strand, within Psest_2971 at 3166.498 kb on - strand, within Psest_2971 at 3166.498 kb on - strand, within Psest_2971 at 3166.498 kb on - strand, within Psest_2971 at 3166.726 kb on - strand, within Psest_2971 at 3166.821 kb on + strand, within Psest_2971 at 3166.821 kb on + strand, within Psest_2971 at 3166.822 kb on - strand, within Psest_2971 at 3166.822 kb on - strand, within Psest_2971 at 3166.899 kb on + strand, within Psest_2971 at 3167.029 kb on - strand at 3167.075 kb on + strand at 3167.075 kb on + strand at 3167.075 kb on + strand at 3167.075 kb on + strand at 3167.075 kb on + strand at 3167.076 kb on - strand at 3167.076 kb on - strand at 3167.076 kb on - strand at 3167.076 kb on - strand at 3167.076 kb on - strand at 3167.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,164,319 + -2.4 3,164,338 + +0.0 3,164,348 - +0.4 3,164,467 + -0.8 3,164,467 + -0.1 3,164,467 + +0.7 3,164,467 + -0.1 3,164,467 + -0.5 3,164,467 + -1.2 3,164,468 - -0.5 3,164,468 - -2.4 3,164,468 - +0.6 3,164,468 - -1.1 3,164,468 - +0.5 3,164,501 - -0.2 3,164,614 + Psest_2969 0.19 -0.5 3,164,614 + Psest_2969 0.19 -0.9 3,164,614 + Psest_2969 0.19 +0.3 3,164,615 - Psest_2969 0.20 +0.4 3,164,615 - Psest_2969 0.20 +0.2 3,164,615 - Psest_2969 0.20 -0.3 3,164,615 - Psest_2969 0.20 +0.9 3,164,665 + Psest_2969 0.26 -2.4 3,164,666 - Psest_2969 0.26 +0.7 3,164,666 - Psest_2969 0.26 -0.0 3,164,666 - Psest_2969 0.26 +0.6 3,164,666 - Psest_2969 0.26 +0.5 3,164,756 - Psest_2969 0.37 +0.1 3,164,903 - Psest_2969 0.54 -0.2 3,164,930 - Psest_2969 0.58 -0.4 3,165,196 + -2.4 3,165,196 + +0.7 3,165,196 + -1.3 3,165,197 - +0.1 3,165,197 - -0.5 3,165,197 - -0.9 3,165,197 - -0.5 3,165,283 - -0.1 3,165,444 + Psest_2970 0.14 +0.7 3,165,444 + Psest_2970 0.14 -1.9 3,165,444 + Psest_2970 0.14 +1.4 3,165,444 + Psest_2970 0.14 +1.8 3,165,444 + Psest_2970 0.14 +0.1 3,165,444 + Psest_2970 0.14 -1.3 3,165,444 + Psest_2970 0.14 -0.8 3,165,444 + Psest_2970 0.14 +1.1 3,165,445 - Psest_2970 0.14 +0.6 3,165,445 - Psest_2970 0.14 +0.8 3,165,445 - Psest_2970 0.14 +1.7 3,165,445 - Psest_2970 0.14 -0.7 3,165,445 - Psest_2970 0.14 -0.9 3,165,445 - Psest_2970 0.14 -0.1 3,165,445 - Psest_2970 0.14 +0.8 3,165,445 - Psest_2970 0.14 +0.8 3,165,445 - Psest_2970 0.14 +0.7 3,165,445 - Psest_2970 0.14 +0.7 3,165,445 - Psest_2970 0.14 +1.4 3,165,454 + Psest_2970 0.15 +1.7 3,165,454 + Psest_2970 0.15 +0.2 3,165,454 + Psest_2970 0.15 +0.0 3,165,454 + Psest_2970 0.15 +0.6 3,165,454 + Psest_2970 0.15 -1.7 3,165,454 + Psest_2970 0.15 -0.5 3,165,454 + Psest_2970 0.15 -2.8 3,165,454 + Psest_2970 0.15 -0.4 3,165,455 - Psest_2970 0.15 +2.2 3,165,455 - Psest_2970 0.15 -0.9 3,165,455 - Psest_2970 0.15 -0.4 3,165,455 - Psest_2970 0.15 +0.8 3,165,455 - Psest_2970 0.15 +1.1 3,165,455 - Psest_2970 0.15 +0.8 3,165,455 - Psest_2970 0.15 +0.3 3,165,455 - Psest_2970 0.15 +0.7 3,165,455 - Psest_2970 0.15 +1.4 3,165,455 - Psest_2970 0.15 -0.2 3,165,455 - Psest_2970 0.15 +1.3 3,165,455 - Psest_2970 0.15 +1.0 3,165,455 - Psest_2970 0.15 +0.1 3,165,455 - Psest_2970 0.15 -0.8 3,165,455 - Psest_2970 0.15 -0.7 3,165,455 - Psest_2970 0.15 +1.1 3,165,455 - Psest_2970 0.15 +0.0 3,165,456 + Psest_2970 0.15 +0.6 3,165,456 + Psest_2970 0.15 -0.5 3,165,456 + Psest_2970 0.15 -2.1 3,165,456 + Psest_2970 0.15 -0.2 3,165,456 + Psest_2970 0.15 -0.5 3,165,456 + Psest_2970 0.15 -2.4 3,165,456 + Psest_2970 0.15 +1.1 3,165,456 + Psest_2970 0.15 -0.9 3,165,457 - Psest_2970 0.15 +1.0 3,165,457 - Psest_2970 0.15 +0.4 3,165,457 - Psest_2970 0.15 +0.2 3,165,457 - Psest_2970 0.15 +0.2 3,165,457 - Psest_2970 0.15 +1.3 3,165,457 - Psest_2970 0.15 +0.4 3,165,457 - Psest_2970 0.15 -0.5 3,165,457 - Psest_2970 0.15 +0.7 3,165,457 - Psest_2970 0.15 -0.1 3,165,506 + Psest_2970 0.21 -1.3 3,165,507 - Psest_2970 0.21 +0.8 3,165,507 - Psest_2970 0.21 +1.1 3,165,507 - Psest_2970 0.21 +0.5 3,165,532 - Psest_2970 0.23 +1.6 3,165,597 - Psest_2970 0.30 +0.7 3,165,643 + Psest_2970 0.35 -0.5 3,165,644 - Psest_2970 0.35 +0.1 3,165,645 + Psest_2970 0.36 -1.5 3,165,646 - Psest_2970 0.36 +1.8 3,165,646 - Psest_2970 0.36 -2.4 3,165,646 - Psest_2970 0.36 +1.7 3,165,646 - Psest_2970 0.36 -0.2 3,165,851 + Psest_2970 0.58 -0.6 3,165,956 + Psest_2970 0.69 +0.2 3,165,956 + Psest_2970 0.69 -0.6 3,165,956 + Psest_2970 0.69 +0.4 3,165,957 - Psest_2970 0.69 -1.4 3,165,957 - Psest_2970 0.69 +0.5 3,165,957 - Psest_2970 0.69 +1.4 3,165,957 - Psest_2970 0.69 +0.3 3,165,957 - Psest_2970 0.69 +0.5 3,166,041 + Psest_2970 0.78 -0.6 3,166,042 - Psest_2970 0.78 -0.7 3,166,042 - Psest_2970 0.78 +0.3 3,166,042 - Psest_2970 0.78 +0.6 3,166,042 - Psest_2970 0.78 +0.7 3,166,135 + Psest_2970 0.88 +0.3 3,166,135 + Psest_2970 0.88 -2.1 3,166,136 - Psest_2970 0.88 -0.9 3,166,148 + Psest_2970 0.89 -0.3 3,166,234 + -1.1 3,166,235 - +0.1 3,166,272 - +0.4 3,166,272 - -0.2 3,166,272 - +0.2 3,166,272 - +1.1 3,166,289 + -1.0 3,166,292 + -0.5 3,166,293 - -1.1 3,166,336 + +0.8 3,166,336 + -0.9 3,166,337 - -1.0 3,166,337 - -1.2 3,166,450 + Psest_2971 0.17 +0.4 3,166,485 + Psest_2971 0.21 -4.6 3,166,494 - Psest_2971 0.22 +2.6 3,166,494 - Psest_2971 0.22 -2.4 3,166,494 - Psest_2971 0.22 -0.7 3,166,494 - Psest_2971 0.22 -1.7 3,166,497 + Psest_2971 0.23 -2.8 3,166,497 + Psest_2971 0.23 +0.5 3,166,497 + Psest_2971 0.23 -1.6 3,166,498 - Psest_2971 0.23 -1.7 3,166,498 - Psest_2971 0.23 -0.8 3,166,498 - Psest_2971 0.23 -1.2 3,166,498 - Psest_2971 0.23 -1.2 3,166,726 - Psest_2971 0.53 -0.4 3,166,821 + Psest_2971 0.66 -2.4 3,166,821 + Psest_2971 0.66 -1.8 3,166,822 - Psest_2971 0.66 +0.9 3,166,822 - Psest_2971 0.66 +1.1 3,166,899 + Psest_2971 0.76 -3.1 3,167,029 - -1.1 3,167,075 + +1.0 3,167,075 + -1.5 3,167,075 + -0.1 3,167,075 + +0.1 3,167,075 + -1.1 3,167,076 - -0.4 3,167,076 - +0.3 3,167,076 - -0.4 3,167,076 - +0.8 3,167,076 - -0.5 3,167,076 - -0.9
Or see this region's nucleotide sequence