Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2968

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2966 and Psest_2967 are separated by 19 nucleotidesPsest_2967 and Psest_2968 are separated by 11 nucleotidesPsest_2968 and Psest_2969 are separated by 195 nucleotides Psest_2966: Psest_2966 - Flagellar hook capping protein, at 3,162,696 to 3,163,379 _2966 Psest_2967: Psest_2967 - flagellar basal-body rod protein FlgC, at 3,163,399 to 3,163,842 _2967 Psest_2968: Psest_2968 - flagellar basal-body rod protein FlgB, at 3,163,854 to 3,164,258 _2968 Psest_2969: Psest_2969 - Methylase of chemotaxis methyl-accepting proteins, at 3,164,454 to 3,165,278 _2969 Position (kb) 3163 3164 3165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3162.982 kb on + strand, within Psest_2966at 3162.982 kb on + strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3163.185 kb on - strand, within Psest_2966at 3163.185 kb on - strand, within Psest_2966at 3163.233 kb on + strand, within Psest_2966at 3163.331 kb on - strandat 3163.379 kb on + strandat 3163.379 kb on + strandat 3163.379 kb on + strandat 3163.379 kb on + strandat 3163.380 kb on - strandat 3163.380 kb on - strandat 3163.380 kb on - strandat 3163.397 kb on + strandat 3163.397 kb on + strandat 3163.397 kb on + strandat 3163.398 kb on - strandat 3163.398 kb on - strandat 3163.398 kb on - strandat 3163.398 kb on - strandat 3163.526 kb on + strand, within Psest_2967at 3163.529 kb on + strand, within Psest_2967at 3163.529 kb on + strand, within Psest_2967at 3163.613 kb on - strand, within Psest_2967at 3163.613 kb on - strand, within Psest_2967at 3163.825 kb on + strandat 3163.825 kb on + strandat 3163.848 kb on - strandat 3163.942 kb on + strand, within Psest_2968at 3163.942 kb on + strand, within Psest_2968at 3163.942 kb on + strand, within Psest_2968at 3163.943 kb on - strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.051 kb on + strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.052 kb on - strand, within Psest_2968at 3164.146 kb on + strand, within Psest_2968at 3164.146 kb on + strand, within Psest_2968at 3164.146 kb on + strand, within Psest_2968at 3164.146 kb on + strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.147 kb on - strand, within Psest_2968at 3164.278 kb on + strandat 3164.279 kb on - strandat 3164.319 kb on + strandat 3164.338 kb on + strandat 3164.348 kb on - strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.501 kb on - strandat 3164.614 kb on + strand, within Psest_2969at 3164.614 kb on + strand, within Psest_2969at 3164.614 kb on + strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.665 kb on + strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.756 kb on - strand, within Psest_2969at 3164.903 kb on - strand, within Psest_2969at 3164.930 kb on - strand, within Psest_2969at 3165.196 kb on + strandat 3165.196 kb on + strandat 3165.196 kb on + strandat 3165.197 kb on - strandat 3165.197 kb on - strandat 3165.197 kb on - strandat 3165.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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3,162,982 + Psest_2966 0.42 -2.2
3,162,982 + Psest_2966 0.42 -0.8
3,162,983 - Psest_2966 0.42 +0.9
3,162,983 - Psest_2966 0.42 -0.2
3,162,983 - Psest_2966 0.42 -1.0
3,162,983 - Psest_2966 0.42 -1.2
3,162,983 - Psest_2966 0.42 +0.8
3,163,185 - Psest_2966 0.71 +0.2
3,163,185 - Psest_2966 0.71 -0.1
3,163,233 + Psest_2966 0.79 -2.1
3,163,331 - -0.9
3,163,379 + -0.2
3,163,379 + -0.2
3,163,379 + -0.2
3,163,379 + -0.9
3,163,380 - +0.6
3,163,380 - +0.9
3,163,380 - -2.2
3,163,397 + -1.6
3,163,397 + -0.6
3,163,397 + -2.4
3,163,398 - +0.6
3,163,398 - -0.2
3,163,398 - +1.1
3,163,398 - -0.5
3,163,526 + Psest_2967 0.29 -2.2
3,163,529 + Psest_2967 0.29 -2.4
3,163,529 + Psest_2967 0.29 -2.6
3,163,613 - Psest_2967 0.48 -2.0
3,163,613 - Psest_2967 0.48 -0.2
3,163,825 + -0.9
3,163,825 + -1.2
3,163,848 - -0.1
3,163,942 + Psest_2968 0.22 -2.9
3,163,942 + Psest_2968 0.22 -3.0
3,163,942 + Psest_2968 0.22 -0.3
3,163,943 - Psest_2968 0.22 -2.1
3,164,051 + Psest_2968 0.49 -1.4
3,164,051 + Psest_2968 0.49 -2.9
3,164,051 + Psest_2968 0.49 +0.1
3,164,051 + Psest_2968 0.49 -3.3
3,164,051 + Psest_2968 0.49 -0.7
3,164,051 + Psest_2968 0.49 -1.7
3,164,051 + Psest_2968 0.49 +0.7
3,164,051 + Psest_2968 0.49 -1.4
3,164,052 - Psest_2968 0.49 -4.3
3,164,052 - Psest_2968 0.49 -3.4
3,164,052 - Psest_2968 0.49 -0.0
3,164,052 - Psest_2968 0.49 -1.6
3,164,052 - Psest_2968 0.49 -0.5
3,164,052 - Psest_2968 0.49 -0.8
3,164,052 - Psest_2968 0.49 -1.4
3,164,052 - Psest_2968 0.49 -1.0
3,164,052 - Psest_2968 0.49 -1.7
3,164,052 - Psest_2968 0.49 -3.4
3,164,052 - Psest_2968 0.49 -0.6
3,164,052 - Psest_2968 0.49 +0.3
3,164,052 - Psest_2968 0.49 -3.6
3,164,146 + Psest_2968 0.72 -0.7
3,164,146 + Psest_2968 0.72 +0.1
3,164,146 + Psest_2968 0.72 -1.2
3,164,146 + Psest_2968 0.72 -1.6
3,164,147 - Psest_2968 0.72 -1.8
3,164,147 - Psest_2968 0.72 -2.4
3,164,147 - Psest_2968 0.72 -0.9
3,164,147 - Psest_2968 0.72 +1.1
3,164,147 - Psest_2968 0.72 -1.9
3,164,147 - Psest_2968 0.72 -1.9
3,164,147 - Psest_2968 0.72 -0.9
3,164,147 - Psest_2968 0.72 -2.2
3,164,278 + -2.2
3,164,279 - -0.9
3,164,319 + -2.4
3,164,338 + +0.0
3,164,348 - +0.4
3,164,467 + -0.8
3,164,467 + -0.1
3,164,467 + +0.7
3,164,467 + -0.1
3,164,467 + -0.5
3,164,467 + -1.2
3,164,468 - -0.5
3,164,468 - -2.4
3,164,468 - +0.6
3,164,468 - -1.1
3,164,468 - +0.5
3,164,501 - -0.2
3,164,614 + Psest_2969 0.19 -0.5
3,164,614 + Psest_2969 0.19 -0.9
3,164,614 + Psest_2969 0.19 +0.3
3,164,615 - Psest_2969 0.20 +0.4
3,164,615 - Psest_2969 0.20 +0.2
3,164,615 - Psest_2969 0.20 -0.3
3,164,615 - Psest_2969 0.20 +0.9
3,164,665 + Psest_2969 0.26 -2.4
3,164,666 - Psest_2969 0.26 +0.7
3,164,666 - Psest_2969 0.26 -0.0
3,164,666 - Psest_2969 0.26 +0.6
3,164,666 - Psest_2969 0.26 +0.5
3,164,756 - Psest_2969 0.37 +0.1
3,164,903 - Psest_2969 0.54 -0.2
3,164,930 - Psest_2969 0.58 -0.4
3,165,196 + -2.4
3,165,196 + +0.7
3,165,196 + -1.3
3,165,197 - +0.1
3,165,197 - -0.5
3,165,197 - -0.9
3,165,197 - -0.5

Or see this region's nucleotide sequence