Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2965 and Psest_2966 are separated by 30 nucleotides Psest_2966 and Psest_2967 are separated by 19 nucleotides Psest_2967 and Psest_2968 are separated by 11 nucleotides Psest_2968 and Psest_2969 are separated by 195 nucleotides
Psest_2965: Psest_2965 - fagellar hook-basal body proteins, at 3,161,079 to 3,162,665
_2965
Psest_2966: Psest_2966 - Flagellar hook capping protein, at 3,162,696 to 3,163,379
_2966
Psest_2967: Psest_2967 - flagellar basal-body rod protein FlgC, at 3,163,399 to 3,163,842
_2967
Psest_2968: Psest_2968 - flagellar basal-body rod protein FlgB, at 3,163,854 to 3,164,258
_2968
Psest_2969: Psest_2969 - Methylase of chemotaxis methyl-accepting proteins, at 3,164,454 to 3,165,278
_2969
Position (kb)
3163
3164 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3162.442 kb on + strand, within Psest_2965 at 3162.442 kb on + strand, within Psest_2965 at 3162.442 kb on + strand, within Psest_2965 at 3162.443 kb on - strand, within Psest_2965 at 3162.449 kb on + strand, within Psest_2965 at 3162.449 kb on + strand, within Psest_2965 at 3162.449 kb on + strand, within Psest_2965 at 3162.476 kb on + strand, within Psest_2965 at 3162.476 kb on + strand, within Psest_2965 at 3162.817 kb on + strand, within Psest_2966 at 3162.817 kb on + strand, within Psest_2966 at 3162.817 kb on + strand, within Psest_2966 at 3162.817 kb on + strand, within Psest_2966 at 3162.817 kb on + strand, within Psest_2966 at 3162.818 kb on - strand, within Psest_2966 at 3162.818 kb on - strand, within Psest_2966 at 3162.818 kb on - strand, within Psest_2966 at 3162.818 kb on - strand, within Psest_2966 at 3162.818 kb on - strand, within Psest_2966 at 3162.841 kb on + strand, within Psest_2966 at 3162.841 kb on + strand, within Psest_2966 at 3162.842 kb on - strand, within Psest_2966 at 3162.842 kb on - strand, within Psest_2966 at 3162.845 kb on + strand, within Psest_2966 at 3162.982 kb on + strand, within Psest_2966 at 3162.982 kb on + strand, within Psest_2966 at 3162.983 kb on - strand, within Psest_2966 at 3162.983 kb on - strand, within Psest_2966 at 3162.983 kb on - strand, within Psest_2966 at 3162.983 kb on - strand, within Psest_2966 at 3162.983 kb on - strand, within Psest_2966 at 3163.185 kb on - strand, within Psest_2966 at 3163.185 kb on - strand, within Psest_2966 at 3163.233 kb on + strand, within Psest_2966 at 3163.331 kb on - strand at 3163.379 kb on + strand at 3163.379 kb on + strand at 3163.379 kb on + strand at 3163.379 kb on + strand at 3163.380 kb on - strand at 3163.380 kb on - strand at 3163.380 kb on - strand at 3163.397 kb on + strand at 3163.397 kb on + strand at 3163.397 kb on + strand at 3163.398 kb on - strand at 3163.398 kb on - strand at 3163.398 kb on - strand at 3163.398 kb on - strand at 3163.526 kb on + strand, within Psest_2967 at 3163.529 kb on + strand, within Psest_2967 at 3163.529 kb on + strand, within Psest_2967 at 3163.613 kb on - strand, within Psest_2967 at 3163.613 kb on - strand, within Psest_2967 at 3163.825 kb on + strand at 3163.825 kb on + strand at 3163.848 kb on - strand at 3163.942 kb on + strand, within Psest_2968 at 3163.942 kb on + strand, within Psest_2968 at 3163.942 kb on + strand, within Psest_2968 at 3163.943 kb on - strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.051 kb on + strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.052 kb on - strand, within Psest_2968 at 3164.146 kb on + strand, within Psest_2968 at 3164.146 kb on + strand, within Psest_2968 at 3164.146 kb on + strand, within Psest_2968 at 3164.146 kb on + strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.147 kb on - strand, within Psest_2968 at 3164.278 kb on + strand at 3164.279 kb on - strand at 3164.319 kb on + strand at 3164.338 kb on + strand at 3164.348 kb on - strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.467 kb on + strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.468 kb on - strand at 3164.501 kb on - strand at 3164.614 kb on + strand, within Psest_2969 at 3164.614 kb on + strand, within Psest_2969 at 3164.614 kb on + strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.615 kb on - strand, within Psest_2969 at 3164.665 kb on + strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.666 kb on - strand, within Psest_2969 at 3164.756 kb on - strand, within Psest_2969
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,162,442 + Psest_2965 0.86 -1.5 3,162,442 + Psest_2965 0.86 -1.2 3,162,442 + Psest_2965 0.86 -0.6 3,162,443 - Psest_2965 0.86 -1.2 3,162,449 + Psest_2965 0.86 -2.9 3,162,449 + Psest_2965 0.86 -2.1 3,162,449 + Psest_2965 0.86 -0.9 3,162,476 + Psest_2965 0.88 -2.5 3,162,476 + Psest_2965 0.88 -0.5 3,162,817 + Psest_2966 0.18 -1.7 3,162,817 + Psest_2966 0.18 -1.0 3,162,817 + Psest_2966 0.18 -0.2 3,162,817 + Psest_2966 0.18 -1.7 3,162,817 + Psest_2966 0.18 -0.5 3,162,818 - Psest_2966 0.18 +0.5 3,162,818 - Psest_2966 0.18 -0.5 3,162,818 - Psest_2966 0.18 -0.5 3,162,818 - Psest_2966 0.18 +0.5 3,162,818 - Psest_2966 0.18 -0.7 3,162,841 + Psest_2966 0.21 +0.8 3,162,841 + Psest_2966 0.21 -2.6 3,162,842 - Psest_2966 0.21 +0.3 3,162,842 - Psest_2966 0.21 -0.9 3,162,845 + Psest_2966 0.22 -1.4 3,162,982 + Psest_2966 0.42 -2.2 3,162,982 + Psest_2966 0.42 -0.8 3,162,983 - Psest_2966 0.42 +0.9 3,162,983 - Psest_2966 0.42 -0.2 3,162,983 - Psest_2966 0.42 -1.0 3,162,983 - Psest_2966 0.42 -1.2 3,162,983 - Psest_2966 0.42 +0.8 3,163,185 - Psest_2966 0.71 +0.2 3,163,185 - Psest_2966 0.71 -0.1 3,163,233 + Psest_2966 0.79 -2.1 3,163,331 - -0.9 3,163,379 + -0.2 3,163,379 + -0.2 3,163,379 + -0.2 3,163,379 + -0.9 3,163,380 - +0.6 3,163,380 - +0.9 3,163,380 - -2.2 3,163,397 + -1.6 3,163,397 + -0.6 3,163,397 + -2.4 3,163,398 - +0.6 3,163,398 - -0.2 3,163,398 - +1.1 3,163,398 - -0.5 3,163,526 + Psest_2967 0.29 -2.2 3,163,529 + Psest_2967 0.29 -2.4 3,163,529 + Psest_2967 0.29 -2.6 3,163,613 - Psest_2967 0.48 -2.0 3,163,613 - Psest_2967 0.48 -0.2 3,163,825 + -0.9 3,163,825 + -1.2 3,163,848 - -0.1 3,163,942 + Psest_2968 0.22 -2.9 3,163,942 + Psest_2968 0.22 -3.0 3,163,942 + Psest_2968 0.22 -0.3 3,163,943 - Psest_2968 0.22 -2.1 3,164,051 + Psest_2968 0.49 -1.4 3,164,051 + Psest_2968 0.49 -2.9 3,164,051 + Psest_2968 0.49 +0.1 3,164,051 + Psest_2968 0.49 -3.3 3,164,051 + Psest_2968 0.49 -0.7 3,164,051 + Psest_2968 0.49 -1.7 3,164,051 + Psest_2968 0.49 +0.7 3,164,051 + Psest_2968 0.49 -1.4 3,164,052 - Psest_2968 0.49 -4.3 3,164,052 - Psest_2968 0.49 -3.4 3,164,052 - Psest_2968 0.49 -0.0 3,164,052 - Psest_2968 0.49 -1.6 3,164,052 - Psest_2968 0.49 -0.5 3,164,052 - Psest_2968 0.49 -0.8 3,164,052 - Psest_2968 0.49 -1.4 3,164,052 - Psest_2968 0.49 -1.0 3,164,052 - Psest_2968 0.49 -1.7 3,164,052 - Psest_2968 0.49 -3.4 3,164,052 - Psest_2968 0.49 -0.6 3,164,052 - Psest_2968 0.49 +0.3 3,164,052 - Psest_2968 0.49 -3.6 3,164,146 + Psest_2968 0.72 -0.7 3,164,146 + Psest_2968 0.72 +0.1 3,164,146 + Psest_2968 0.72 -1.2 3,164,146 + Psest_2968 0.72 -1.6 3,164,147 - Psest_2968 0.72 -1.8 3,164,147 - Psest_2968 0.72 -2.4 3,164,147 - Psest_2968 0.72 -0.9 3,164,147 - Psest_2968 0.72 +1.1 3,164,147 - Psest_2968 0.72 -1.9 3,164,147 - Psest_2968 0.72 -1.9 3,164,147 - Psest_2968 0.72 -0.9 3,164,147 - Psest_2968 0.72 -2.2 3,164,278 + -2.2 3,164,279 - -0.9 3,164,319 + -2.4 3,164,338 + +0.0 3,164,348 - +0.4 3,164,467 + -0.8 3,164,467 + -0.1 3,164,467 + +0.7 3,164,467 + -0.1 3,164,467 + -0.5 3,164,467 + -1.2 3,164,468 - -0.5 3,164,468 - -2.4 3,164,468 - +0.6 3,164,468 - -1.1 3,164,468 - +0.5 3,164,501 - -0.2 3,164,614 + Psest_2969 0.19 -0.5 3,164,614 + Psest_2969 0.19 -0.9 3,164,614 + Psest_2969 0.19 +0.3 3,164,615 - Psest_2969 0.20 +0.4 3,164,615 - Psest_2969 0.20 +0.2 3,164,615 - Psest_2969 0.20 -0.3 3,164,615 - Psest_2969 0.20 +0.9 3,164,665 + Psest_2969 0.26 -2.4 3,164,666 - Psest_2969 0.26 +0.7 3,164,666 - Psest_2969 0.26 -0.0 3,164,666 - Psest_2969 0.26 +0.6 3,164,666 - Psest_2969 0.26 +0.5 3,164,756 - Psest_2969 0.37 +0.1
Or see this region's nucleotide sequence