Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2959 and Psest_2960 are separated by 3 nucleotides Psest_2960 and Psest_2961 are separated by 10 nucleotides
Psest_2959: Psest_2959 - flagellar hook-associated protein FlgK, at 3,154,225 to 3,156,240
_2959
Psest_2960: Psest_2960 - flagellar rod assembly protein/muramidase FlgJ, at 3,156,244 to 3,157,416
_2960
Psest_2961: Psest_2961 - Flagellar basal-body P-ring protein, at 3,157,427 to 3,158,527
_2961
Position (kb)
3156
3157
3158 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3155.261 kb on + strand, within Psest_2959 at 3155.261 kb on + strand, within Psest_2959 at 3155.261 kb on + strand, within Psest_2959 at 3155.262 kb on - strand, within Psest_2959 at 3155.262 kb on - strand, within Psest_2959 at 3155.262 kb on - strand, within Psest_2959 at 3155.569 kb on - strand, within Psest_2959 at 3155.596 kb on + strand, within Psest_2959 at 3155.596 kb on + strand, within Psest_2959 at 3155.596 kb on + strand, within Psest_2959 at 3155.596 kb on + strand, within Psest_2959 at 3155.597 kb on - strand, within Psest_2959 at 3155.597 kb on - strand, within Psest_2959 at 3155.597 kb on - strand, within Psest_2959 at 3155.597 kb on - strand, within Psest_2959 at 3155.612 kb on + strand, within Psest_2959 at 3155.670 kb on + strand, within Psest_2959 at 3155.734 kb on + strand, within Psest_2959 at 3155.798 kb on + strand, within Psest_2959 at 3155.799 kb on - strand, within Psest_2959 at 3155.934 kb on + strand, within Psest_2959 at 3155.934 kb on + strand, within Psest_2959 at 3155.935 kb on - strand, within Psest_2959 at 3155.978 kb on + strand, within Psest_2959 at 3155.978 kb on + strand, within Psest_2959 at 3155.979 kb on - strand, within Psest_2959 at 3155.979 kb on - strand, within Psest_2959 at 3155.979 kb on - strand, within Psest_2959 at 3156.006 kb on + strand, within Psest_2959 at 3156.006 kb on + strand, within Psest_2959 at 3156.006 kb on + strand, within Psest_2959 at 3156.006 kb on + strand, within Psest_2959 at 3156.006 kb on + strand, within Psest_2959 at 3156.007 kb on - strand, within Psest_2959 at 3156.007 kb on - strand, within Psest_2959 at 3156.007 kb on - strand, within Psest_2959 at 3156.007 kb on - strand, within Psest_2959 at 3156.007 kb on - strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.009 kb on + strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.010 kb on - strand, within Psest_2959 at 3156.013 kb on - strand, within Psest_2959 at 3156.013 kb on - strand, within Psest_2959 at 3156.013 kb on - strand, within Psest_2959 at 3156.041 kb on + strand at 3156.041 kb on + strand at 3156.041 kb on + strand at 3156.083 kb on + strand at 3156.083 kb on + strand at 3156.083 kb on + strand at 3156.151 kb on - strand at 3156.229 kb on + strand at 3156.230 kb on - strand at 3156.296 kb on + strand at 3156.296 kb on + strand at 3156.296 kb on + strand at 3156.296 kb on + strand at 3156.296 kb on + strand at 3156.297 kb on - strand at 3156.297 kb on - strand at 3156.297 kb on - strand at 3156.297 kb on - strand at 3156.370 kb on + strand, within Psest_2960 at 3156.492 kb on - strand, within Psest_2960 at 3156.537 kb on - strand, within Psest_2960 at 3156.914 kb on - strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.172 kb on + strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.173 kb on - strand, within Psest_2960 at 3157.184 kb on + strand, within Psest_2960 at 3157.184 kb on + strand, within Psest_2960 at 3157.204 kb on - strand, within Psest_2960 at 3157.367 kb on + strand at 3157.367 kb on + strand at 3157.367 kb on + strand at 3157.368 kb on - strand at 3157.428 kb on + strand at 3157.429 kb on - strand at 3157.429 kb on - strand at 3157.429 kb on - strand at 3157.429 kb on - strand at 3157.818 kb on + strand, within Psest_2961 at 3157.819 kb on - strand, within Psest_2961 at 3157.819 kb on - strand, within Psest_2961 at 3157.972 kb on + strand, within Psest_2961 at 3157.973 kb on - strand, within Psest_2961 at 3158.124 kb on + strand, within Psest_2961 at 3158.290 kb on + strand, within Psest_2961
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,155,261 + Psest_2959 0.51 -3.2 3,155,261 + Psest_2959 0.51 -0.7 3,155,261 + Psest_2959 0.51 -3.6 3,155,262 - Psest_2959 0.51 -0.2 3,155,262 - Psest_2959 0.51 -0.5 3,155,262 - Psest_2959 0.51 -0.8 3,155,569 - Psest_2959 0.67 +1.8 3,155,596 + Psest_2959 0.68 -1.0 3,155,596 + Psest_2959 0.68 -0.2 3,155,596 + Psest_2959 0.68 -1.7 3,155,596 + Psest_2959 0.68 -0.2 3,155,597 - Psest_2959 0.68 +0.1 3,155,597 - Psest_2959 0.68 +0.2 3,155,597 - Psest_2959 0.68 +0.5 3,155,597 - Psest_2959 0.68 -0.8 3,155,612 + Psest_2959 0.69 -2.4 3,155,670 + Psest_2959 0.72 +0.3 3,155,734 + Psest_2959 0.75 -1.0 3,155,798 + Psest_2959 0.78 +1.1 3,155,799 - Psest_2959 0.78 +3.7 3,155,934 + Psest_2959 0.85 +1.8 3,155,934 + Psest_2959 0.85 -1.2 3,155,935 - Psest_2959 0.85 +0.8 3,155,978 + Psest_2959 0.87 -1.6 3,155,978 + Psest_2959 0.87 -0.0 3,155,979 - Psest_2959 0.87 -0.5 3,155,979 - Psest_2959 0.87 -2.4 3,155,979 - Psest_2959 0.87 -0.2 3,156,006 + Psest_2959 0.88 -0.8 3,156,006 + Psest_2959 0.88 -1.9 3,156,006 + Psest_2959 0.88 +0.2 3,156,006 + Psest_2959 0.88 -0.2 3,156,006 + Psest_2959 0.88 -1.6 3,156,007 - Psest_2959 0.88 -1.4 3,156,007 - Psest_2959 0.88 -1.6 3,156,007 - Psest_2959 0.88 +0.1 3,156,007 - Psest_2959 0.88 -0.1 3,156,007 - Psest_2959 0.88 -2.1 3,156,009 + Psest_2959 0.88 -0.9 3,156,009 + Psest_2959 0.88 -1.4 3,156,009 + Psest_2959 0.88 +1.1 3,156,009 + Psest_2959 0.88 +0.1 3,156,009 + Psest_2959 0.88 -0.4 3,156,009 + Psest_2959 0.88 -0.9 3,156,009 + Psest_2959 0.88 -0.9 3,156,010 - Psest_2959 0.89 -1.2 3,156,010 - Psest_2959 0.89 -1.4 3,156,010 - Psest_2959 0.89 -0.6 3,156,010 - Psest_2959 0.89 +0.9 3,156,010 - Psest_2959 0.89 +0.4 3,156,010 - Psest_2959 0.89 -2.1 3,156,010 - Psest_2959 0.89 -0.9 3,156,010 - Psest_2959 0.89 -0.5 3,156,010 - Psest_2959 0.89 +0.4 3,156,010 - Psest_2959 0.89 -1.8 3,156,010 - Psest_2959 0.89 -1.2 3,156,010 - Psest_2959 0.89 -2.7 3,156,013 - Psest_2959 0.89 -0.5 3,156,013 - Psest_2959 0.89 -1.0 3,156,013 - Psest_2959 0.89 -0.5 3,156,041 + -2.5 3,156,041 + -1.0 3,156,041 + -1.5 3,156,083 + -0.8 3,156,083 + +0.3 3,156,083 + -2.6 3,156,151 - -1.1 3,156,229 + -1.9 3,156,230 - -1.2 3,156,296 + +0.4 3,156,296 + +0.8 3,156,296 + +0.9 3,156,296 + -1.2 3,156,296 + -1.0 3,156,297 - -1.2 3,156,297 - +0.6 3,156,297 - -2.1 3,156,297 - +0.3 3,156,370 + Psest_2960 0.11 +0.2 3,156,492 - Psest_2960 0.21 +1.1 3,156,537 - Psest_2960 0.25 -0.6 3,156,914 - Psest_2960 0.57 +1.4 3,157,172 + Psest_2960 0.79 +0.2 3,157,172 + Psest_2960 0.79 +0.1 3,157,172 + Psest_2960 0.79 +0.7 3,157,172 + Psest_2960 0.79 -0.9 3,157,172 + Psest_2960 0.79 -2.1 3,157,172 + Psest_2960 0.79 -0.5 3,157,172 + Psest_2960 0.79 -1.1 3,157,172 + Psest_2960 0.79 +0.1 3,157,172 + Psest_2960 0.79 -0.5 3,157,172 + Psest_2960 0.79 -1.9 3,157,172 + Psest_2960 0.79 -1.0 3,157,173 - Psest_2960 0.79 -1.7 3,157,173 - Psest_2960 0.79 -3.1 3,157,173 - Psest_2960 0.79 -2.8 3,157,173 - Psest_2960 0.79 -1.7 3,157,173 - Psest_2960 0.79 +1.1 3,157,173 - Psest_2960 0.79 -0.8 3,157,173 - Psest_2960 0.79 +1.1 3,157,173 - Psest_2960 0.79 +0.0 3,157,173 - Psest_2960 0.79 -1.7 3,157,184 + Psest_2960 0.80 -0.9 3,157,184 + Psest_2960 0.80 -2.6 3,157,204 - Psest_2960 0.82 -1.9 3,157,367 + -1.2 3,157,367 + -0.1 3,157,367 + -1.2 3,157,368 - -3.2 3,157,428 + -2.2 3,157,429 - -2.4 3,157,429 - -0.2 3,157,429 - -0.0 3,157,429 - -0.3 3,157,818 + Psest_2961 0.36 -0.8 3,157,819 - Psest_2961 0.36 -2.4 3,157,819 - Psest_2961 0.36 +0.1 3,157,972 + Psest_2961 0.50 -4.5 3,157,973 - Psest_2961 0.50 -1.8 3,158,124 + Psest_2961 0.63 -1.5 3,158,290 + Psest_2961 0.78 -1.7
Or see this region's nucleotide sequence