Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2948

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2946 and Psest_2947 overlap by 4 nucleotidesPsest_2947 and Psest_2948 are separated by 61 nucleotidesPsest_2948 and Psest_2949 are separated by 119 nucleotides Psest_2946: Psest_2946 - septum site-determining protein MinD, at 3,143,335 to 3,144,150 _2946 Psest_2947: Psest_2947 - cell division topological specificity factor MinE, at 3,144,147 to 3,144,404 _2947 Psest_2948: Psest_2948 - pseudouridine synthase, RluA family, at 3,144,466 to 3,145,101 _2948 Psest_2949: Psest_2949 - Aspartyl aminopeptidase, at 3,145,221 to 3,146,510 _2949 Position (kb) 3144 3145 3146Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3143.506 kb on + strand, within Psest_2946at 3143.507 kb on - strand, within Psest_2946at 3143.677 kb on + strand, within Psest_2946at 3143.677 kb on + strand, within Psest_2946at 3143.677 kb on + strand, within Psest_2946at 3143.678 kb on - strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.731 kb on + strand, within Psest_2946at 3143.732 kb on - strand, within Psest_2946at 3143.756 kb on + strand, within Psest_2946at 3143.867 kb on + strand, within Psest_2946at 3143.878 kb on + strand, within Psest_2946at 3143.879 kb on - strand, within Psest_2946at 3144.047 kb on - strand, within Psest_2946at 3144.309 kb on + strand, within Psest_2947at 3144.310 kb on - strand, within Psest_2947at 3144.420 kb on - strandat 3144.475 kb on - strandat 3144.655 kb on - strand, within Psest_2948at 3144.655 kb on - strand, within Psest_2948at 3144.731 kb on - strand, within Psest_2948at 3144.731 kb on - strand, within Psest_2948at 3144.731 kb on - strand, within Psest_2948at 3144.836 kb on + strand, within Psest_2948at 3144.836 kb on + strand, within Psest_2948at 3144.836 kb on + strand, within Psest_2948at 3144.836 kb on + strand, within Psest_2948at 3144.836 kb on + strand, within Psest_2948at 3144.836 kb on + strand, within Psest_2948at 3144.837 kb on - strand, within Psest_2948at 3144.837 kb on - strand, within Psest_2948at 3144.837 kb on - strand, within Psest_2948at 3144.837 kb on - strand, within Psest_2948at 3144.837 kb on - strand, within Psest_2948at 3144.837 kb on - strand, within Psest_2948at 3144.982 kb on + strand, within Psest_2948at 3144.983 kb on - strand, within Psest_2948at 3144.983 kb on - strand, within Psest_2948at 3145.099 kb on + strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.100 kb on - strandat 3145.102 kb on + strandat 3145.167 kb on - strandat 3145.167 kb on - strandat 3145.186 kb on + strandat 3145.187 kb on - strandat 3145.187 kb on - strandat 3145.187 kb on - strandat 3145.188 kb on + strandat 3145.188 kb on + strandat 3145.189 kb on - strandat 3145.189 kb on - strandat 3145.189 kb on - strandat 3145.189 kb on - strandat 3145.189 kb on - strandat 3145.377 kb on + strand, within Psest_2949at 3145.377 kb on + strand, within Psest_2949at 3145.378 kb on - strand, within Psest_2949at 3145.378 kb on - strand, within Psest_2949at 3145.378 kb on - strand, within Psest_2949at 3145.378 kb on - strand, within Psest_2949at 3145.378 kb on - strand, within Psest_2949at 3145.378 kb on - strand, within Psest_2949at 3145.466 kb on + strand, within Psest_2949at 3145.545 kb on + strand, within Psest_2949at 3145.545 kb on + strand, within Psest_2949at 3145.546 kb on - strand, within Psest_2949at 3145.546 kb on - strand, within Psest_2949at 3145.609 kb on - strand, within Psest_2949at 3145.609 kb on - strand, within Psest_2949at 3145.609 kb on - strand, within Psest_2949at 3145.739 kb on - strand, within Psest_2949at 3145.863 kb on + strand, within Psest_2949

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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3,143,506 + Psest_2946 0.21 -1.7
3,143,507 - Psest_2946 0.21 +0.8
3,143,677 + Psest_2946 0.42 +2.3
3,143,677 + Psest_2946 0.42 -0.9
3,143,677 + Psest_2946 0.42 -2.4
3,143,678 - Psest_2946 0.42 -0.9
3,143,731 + Psest_2946 0.49 -2.7
3,143,731 + Psest_2946 0.49 -1.9
3,143,731 + Psest_2946 0.49 -2.1
3,143,731 + Psest_2946 0.49 +0.3
3,143,731 + Psest_2946 0.49 +0.1
3,143,731 + Psest_2946 0.49 -0.9
3,143,731 + Psest_2946 0.49 -1.2
3,143,732 - Psest_2946 0.49 -2.2
3,143,756 + Psest_2946 0.52 -1.9
3,143,867 + Psest_2946 0.65 -1.9
3,143,878 + Psest_2946 0.67 -2.5
3,143,879 - Psest_2946 0.67 -1.2
3,144,047 - Psest_2946 0.87 -1.5
3,144,309 + Psest_2947 0.63 +1.7
3,144,310 - Psest_2947 0.63 +1.1
3,144,420 - +1.3
3,144,475 - +1.6
3,144,655 - Psest_2948 0.30 +2.8
3,144,655 - Psest_2948 0.30 +1.8
3,144,731 - Psest_2948 0.42 +1.8
3,144,731 - Psest_2948 0.42 +1.2
3,144,731 - Psest_2948 0.42 +1.5
3,144,836 + Psest_2948 0.58 +0.8
3,144,836 + Psest_2948 0.58 +1.1
3,144,836 + Psest_2948 0.58 +0.1
3,144,836 + Psest_2948 0.58 +0.8
3,144,836 + Psest_2948 0.58 +0.6
3,144,836 + Psest_2948 0.58 +0.4
3,144,837 - Psest_2948 0.58 +1.2
3,144,837 - Psest_2948 0.58 +2.9
3,144,837 - Psest_2948 0.58 +2.5
3,144,837 - Psest_2948 0.58 +1.7
3,144,837 - Psest_2948 0.58 +1.8
3,144,837 - Psest_2948 0.58 +1.8
3,144,982 + Psest_2948 0.81 +0.1
3,144,983 - Psest_2948 0.81 +0.8
3,144,983 - Psest_2948 0.81 +0.8
3,145,099 + +0.9
3,145,100 - +0.6
3,145,100 - +0.2
3,145,100 - +1.1
3,145,100 - -0.2
3,145,100 - +0.6
3,145,100 - +1.5
3,145,100 - -0.5
3,145,100 - +1.1
3,145,100 - -0.2
3,145,102 + +0.2
3,145,167 - +2.4
3,145,167 - -0.8
3,145,186 + +1.4
3,145,187 - +0.3
3,145,187 - +0.3
3,145,187 - -0.1
3,145,188 + -1.2
3,145,188 + -0.7
3,145,189 - -0.2
3,145,189 - +0.1
3,145,189 - +0.3
3,145,189 - +1.6
3,145,189 - +0.1
3,145,377 + Psest_2949 0.12 +0.0
3,145,377 + Psest_2949 0.12 +0.1
3,145,378 - Psest_2949 0.12 +3.2
3,145,378 - Psest_2949 0.12 +1.8
3,145,378 - Psest_2949 0.12 +1.1
3,145,378 - Psest_2949 0.12 +1.4
3,145,378 - Psest_2949 0.12 +1.7
3,145,378 - Psest_2949 0.12 +0.8
3,145,466 + Psest_2949 0.19 -2.1
3,145,545 + Psest_2949 0.25 +0.2
3,145,545 + Psest_2949 0.25 -0.3
3,145,546 - Psest_2949 0.25 -0.4
3,145,546 - Psest_2949 0.25 -0.3
3,145,609 - Psest_2949 0.30 +2.7
3,145,609 - Psest_2949 0.30 +2.2
3,145,609 - Psest_2949 0.30 +0.7
3,145,739 - Psest_2949 0.40 -0.0
3,145,863 + Psest_2949 0.50 -2.9

Or see this region's nucleotide sequence