Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2939

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2938 and Psest_2939 overlap by 1 nucleotidesPsest_2939 and Psest_2940 are separated by 278 nucleotidesPsest_2940 and Psest_2941 are separated by 203 nucleotides Psest_2938: Psest_2938 - transporter, SSS family, at 3,135,698 to 3,137,353 _2938 Psest_2939: Psest_2939 - Predicted membrane protein, at 3,137,353 to 3,137,667 _2939 Psest_2940: Psest_2940 - Predicted membrane protein, at 3,137,946 to 3,138,170 _2940 Psest_2941: Psest_2941 - hypothetical protein, at 3,138,374 to 3,139,666 _2941 Position (kb) 3137 3138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3136.411 kb on + strand, within Psest_2938at 3136.412 kb on - strand, within Psest_2938at 3136.424 kb on - strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.425 kb on + strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.426 kb on - strand, within Psest_2938at 3136.452 kb on + strand, within Psest_2938at 3136.452 kb on + strand, within Psest_2938at 3136.452 kb on + strand, within Psest_2938at 3136.453 kb on - strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.767 kb on + strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.768 kb on - strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.806 kb on + strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.807 kb on - strand, within Psest_2938at 3136.809 kb on + strand, within Psest_2938at 3136.809 kb on + strand, within Psest_2938at 3136.810 kb on - strand, within Psest_2938at 3136.870 kb on - strand, within Psest_2938at 3136.870 kb on - strand, within Psest_2938at 3137.034 kb on + strand, within Psest_2938at 3137.034 kb on + strand, within Psest_2938at 3137.160 kb on + strand, within Psest_2938at 3137.161 kb on - strand, within Psest_2938at 3137.161 kb on - strand, within Psest_2938at 3137.161 kb on - strand, within Psest_2938at 3137.163 kb on + strand, within Psest_2938at 3137.163 kb on + strand, within Psest_2938at 3137.164 kb on - strand, within Psest_2938at 3137.164 kb on - strand, within Psest_2938at 3137.164 kb on - strand, within Psest_2938at 3137.253 kb on + strandat 3137.254 kb on - strandat 3137.254 kb on - strandat 3137.254 kb on - strandat 3137.354 kb on + strandat 3137.354 kb on + strandat 3137.420 kb on + strand, within Psest_2939at 3137.420 kb on + strand, within Psest_2939at 3137.420 kb on + strand, within Psest_2939at 3137.420 kb on + strand, within Psest_2939at 3137.421 kb on - strand, within Psest_2939at 3137.421 kb on - strand, within Psest_2939at 3137.421 kb on - strand, within Psest_2939at 3137.421 kb on - strand, within Psest_2939at 3137.421 kb on - strand, within Psest_2939at 3137.421 kb on - strand, within Psest_2939at 3137.556 kb on - strand, within Psest_2939at 3137.556 kb on - strand, within Psest_2939at 3137.636 kb on + strandat 3137.636 kb on + strandat 3137.636 kb on + strandat 3137.637 kb on - strandat 3137.637 kb on - strandat 3137.637 kb on - strandat 3137.637 kb on - strandat 3137.690 kb on + strandat 3137.720 kb on + strandat 3137.831 kb on + strandat 3137.837 kb on + strandat 3137.837 kb on + strandat 3137.838 kb on - strandat 3138.003 kb on + strand, within Psest_2940at 3138.003 kb on + strand, within Psest_2940at 3138.004 kb on - strand, within Psest_2940at 3138.004 kb on - strand, within Psest_2940at 3138.078 kb on + strand, within Psest_2940at 3138.078 kb on + strand, within Psest_2940at 3138.168 kb on + strandat 3138.168 kb on + strandat 3138.168 kb on + strandat 3138.168 kb on + strandat 3138.168 kb on + strandat 3138.168 kb on + strandat 3138.168 kb on + strandat 3138.169 kb on - strandat 3138.169 kb on - strandat 3138.169 kb on - strandat 3138.169 kb on - strandat 3138.340 kb on + strandat 3138.371 kb on + strandat 3138.371 kb on + strandat 3138.371 kb on + strandat 3138.371 kb on + strandat 3138.371 kb on + strandat 3138.371 kb on + strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.372 kb on - strandat 3138.419 kb on - strandat 3138.441 kb on + strandat 3138.441 kb on + strandat 3138.442 kb on - strandat 3138.442 kb on - strandat 3138.442 kb on - strandat 3138.442 kb on - strandat 3138.442 kb on - strandat 3138.455 kb on + strandat 3138.557 kb on + strand, within Psest_2941

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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3,136,411 + Psest_2938 0.43 -0.7
3,136,412 - Psest_2938 0.43 +0.0
3,136,424 - Psest_2938 0.44 +0.1
3,136,425 + Psest_2938 0.44 -1.7
3,136,425 + Psest_2938 0.44 -0.1
3,136,425 + Psest_2938 0.44 -0.7
3,136,425 + Psest_2938 0.44 +1.7
3,136,425 + Psest_2938 0.44 +0.7
3,136,425 + Psest_2938 0.44 -2.4
3,136,425 + Psest_2938 0.44 +0.1
3,136,425 + Psest_2938 0.44 -0.9
3,136,425 + Psest_2938 0.44 -2.4
3,136,425 + Psest_2938 0.44 -2.1
3,136,426 - Psest_2938 0.44 +0.9
3,136,426 - Psest_2938 0.44 -0.6
3,136,426 - Psest_2938 0.44 -1.2
3,136,426 - Psest_2938 0.44 -0.4
3,136,426 - Psest_2938 0.44 -0.4
3,136,426 - Psest_2938 0.44 -2.9
3,136,426 - Psest_2938 0.44 -1.3
3,136,426 - Psest_2938 0.44 -3.9
3,136,426 - Psest_2938 0.44 -0.3
3,136,426 - Psest_2938 0.44 -2.2
3,136,452 + Psest_2938 0.46 -2.7
3,136,452 + Psest_2938 0.46 +0.3
3,136,452 + Psest_2938 0.46 -1.2
3,136,453 - Psest_2938 0.46 -1.2
3,136,767 + Psest_2938 0.65 -1.4
3,136,767 + Psest_2938 0.65 +0.3
3,136,767 + Psest_2938 0.65 -2.1
3,136,767 + Psest_2938 0.65 +0.1
3,136,767 + Psest_2938 0.65 -0.6
3,136,767 + Psest_2938 0.65 -0.7
3,136,767 + Psest_2938 0.65 -0.8
3,136,767 + Psest_2938 0.65 +0.1
3,136,767 + Psest_2938 0.65 -0.5
3,136,767 + Psest_2938 0.65 -2.9
3,136,767 + Psest_2938 0.65 -2.1
3,136,767 + Psest_2938 0.65 -1.7
3,136,767 + Psest_2938 0.65 -2.1
3,136,767 + Psest_2938 0.65 -2.3
3,136,767 + Psest_2938 0.65 -1.3
3,136,767 + Psest_2938 0.65 +0.3
3,136,767 + Psest_2938 0.65 -1.7
3,136,767 + Psest_2938 0.65 -2.3
3,136,767 + Psest_2938 0.65 -0.9
3,136,768 - Psest_2938 0.65 -0.1
3,136,768 - Psest_2938 0.65 -1.5
3,136,768 - Psest_2938 0.65 -1.9
3,136,768 - Psest_2938 0.65 -1.9
3,136,768 - Psest_2938 0.65 -0.1
3,136,768 - Psest_2938 0.65 +0.6
3,136,768 - Psest_2938 0.65 -2.9
3,136,768 - Psest_2938 0.65 +0.7
3,136,768 - Psest_2938 0.65 +0.1
3,136,806 + Psest_2938 0.67 -1.7
3,136,806 + Psest_2938 0.67 -1.5
3,136,806 + Psest_2938 0.67 +0.2
3,136,806 + Psest_2938 0.67 +0.3
3,136,806 + Psest_2938 0.67 -2.4
3,136,806 + Psest_2938 0.67 -1.9
3,136,806 + Psest_2938 0.67 -0.9
3,136,806 + Psest_2938 0.67 -1.1
3,136,806 + Psest_2938 0.67 -1.1
3,136,806 + Psest_2938 0.67 -1.5
3,136,807 - Psest_2938 0.67 +0.5
3,136,807 - Psest_2938 0.67 -0.6
3,136,807 - Psest_2938 0.67 -0.7
3,136,807 - Psest_2938 0.67 +0.5
3,136,807 - Psest_2938 0.67 -2.4
3,136,807 - Psest_2938 0.67 +2.1
3,136,807 - Psest_2938 0.67 +1.0
3,136,807 - Psest_2938 0.67 +0.3
3,136,809 + Psest_2938 0.67 -1.4
3,136,809 + Psest_2938 0.67 -2.4
3,136,810 - Psest_2938 0.67 +1.1
3,136,870 - Psest_2938 0.71 -1.2
3,136,870 - Psest_2938 0.71 -0.0
3,137,034 + Psest_2938 0.81 -0.3
3,137,034 + Psest_2938 0.81 -1.1
3,137,160 + Psest_2938 0.88 -1.2
3,137,161 - Psest_2938 0.88 -0.9
3,137,161 - Psest_2938 0.88 -1.9
3,137,161 - Psest_2938 0.88 +0.1
3,137,163 + Psest_2938 0.88 -2.4
3,137,163 + Psest_2938 0.88 -1.3
3,137,164 - Psest_2938 0.89 -0.9
3,137,164 - Psest_2938 0.89 -2.8
3,137,164 - Psest_2938 0.89 -1.4
3,137,253 + -0.5
3,137,254 - -1.2
3,137,254 - -1.1
3,137,254 - -0.9
3,137,354 + -1.5
3,137,354 + -1.7
3,137,420 + Psest_2939 0.21 -1.3
3,137,420 + Psest_2939 0.21 -1.2
3,137,420 + Psest_2939 0.21 -2.2
3,137,420 + Psest_2939 0.21 -0.9
3,137,421 - Psest_2939 0.22 +0.1
3,137,421 - Psest_2939 0.22 -0.8
3,137,421 - Psest_2939 0.22 +0.1
3,137,421 - Psest_2939 0.22 -1.8
3,137,421 - Psest_2939 0.22 -0.6
3,137,421 - Psest_2939 0.22 -0.5
3,137,556 - Psest_2939 0.64 -1.5
3,137,556 - Psest_2939 0.64 -1.1
3,137,636 + +0.5
3,137,636 + -2.9
3,137,636 + -0.5
3,137,637 - +0.1
3,137,637 - -1.2
3,137,637 - +0.1
3,137,637 - -0.9
3,137,690 + +0.2
3,137,720 + -1.8
3,137,831 + -0.6
3,137,837 + -1.2
3,137,837 + +1.7
3,137,838 - -0.5
3,138,003 + Psest_2940 0.25 -1.2
3,138,003 + Psest_2940 0.25 -0.3
3,138,004 - Psest_2940 0.26 +0.4
3,138,004 - Psest_2940 0.26 -0.2
3,138,078 + Psest_2940 0.59 -1.8
3,138,078 + Psest_2940 0.59 +1.8
3,138,168 + -1.8
3,138,168 + +1.2
3,138,168 + +0.4
3,138,168 + +1.5
3,138,168 + +1.2
3,138,168 + +0.3
3,138,168 + +1.2
3,138,169 - +0.0
3,138,169 - -0.8
3,138,169 - -0.8
3,138,169 - +0.2
3,138,340 + +1.0
3,138,371 + +0.4
3,138,371 + +0.9
3,138,371 + -1.0
3,138,371 + -0.1
3,138,371 + +0.7
3,138,371 + +1.8
3,138,372 - -0.2
3,138,372 - +1.2
3,138,372 - +0.6
3,138,372 - +0.6
3,138,372 - +0.0
3,138,372 - +0.1
3,138,372 - +1.6
3,138,372 - +0.6
3,138,372 - +0.6
3,138,372 - +0.9
3,138,372 - +1.2
3,138,372 - +1.3
3,138,419 - +1.8
3,138,441 + -2.1
3,138,441 + -0.7
3,138,442 - +0.5
3,138,442 - +1.2
3,138,442 - +1.0
3,138,442 - +0.9
3,138,442 - +0.7
3,138,455 + +1.0
3,138,557 + Psest_2941 0.14 +0.1

Or see this region's nucleotide sequence