Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2922 and Psest_2923 are separated by 48 nucleotides Psest_2923 and Psest_2924 are separated by 9 nucleotides Psest_2924 and Psest_2925 are separated by 2 nucleotides Psest_2925 and Psest_2926 are separated by 149 nucleotides
Psest_2922: Psest_2922 - Lhr-like helicases, at 3,113,492 to 3,117,919
_2922
Psest_2923: Psest_2923 - hypothetical protein, at 3,117,968 to 3,118,273
_2923
Psest_2924: Psest_2924 - Short-chain alcohol dehydrogenase of unknown specificity, at 3,118,283 to 3,118,981
_2924
Psest_2925: Psest_2925 - Protein of unknown function (DUF1264)., at 3,118,984 to 3,119,799
_2925
Psest_2926: Psest_2926 - TIGR03440 family protein, at 3,119,949 to 3,121,244
_2926
Position (kb)
3118
3119 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3117.389 kb on + strand, within Psest_2922 at 3117.389 kb on + strand, within Psest_2922 at 3117.390 kb on - strand, within Psest_2922 at 3117.390 kb on - strand, within Psest_2922 at 3117.390 kb on - strand, within Psest_2922 at 3117.390 kb on - strand, within Psest_2922 at 3117.393 kb on + strand, within Psest_2922 at 3117.393 kb on + strand, within Psest_2922 at 3117.393 kb on + strand, within Psest_2922 at 3117.393 kb on + strand, within Psest_2922 at 3117.393 kb on + strand, within Psest_2922 at 3117.394 kb on - strand, within Psest_2922 at 3117.394 kb on - strand, within Psest_2922 at 3117.394 kb on - strand, within Psest_2922 at 3117.409 kb on + strand, within Psest_2922 at 3117.562 kb on + strand at 3117.562 kb on + strand at 3117.600 kb on + strand at 3117.600 kb on + strand at 3117.601 kb on - strand at 3117.860 kb on + strand at 3117.861 kb on - strand at 3117.861 kb on - strand at 3117.861 kb on - strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.924 kb on + strand at 3117.925 kb on - strand at 3117.925 kb on - strand at 3117.925 kb on - strand at 3117.925 kb on - strand at 3117.925 kb on - strand at 3118.066 kb on + strand, within Psest_2923 at 3118.066 kb on + strand, within Psest_2923 at 3118.268 kb on + strand at 3118.509 kb on - strand, within Psest_2924 at 3118.529 kb on + strand, within Psest_2924 at 3118.530 kb on - strand, within Psest_2924 at 3118.727 kb on + strand, within Psest_2924 at 3118.727 kb on + strand, within Psest_2924 at 3118.727 kb on + strand, within Psest_2924 at 3118.859 kb on + strand, within Psest_2924 at 3118.860 kb on - strand, within Psest_2924 at 3118.898 kb on + strand, within Psest_2924 at 3118.898 kb on + strand, within Psest_2924 at 3118.980 kb on - strand at 3119.163 kb on + strand, within Psest_2925 at 3119.164 kb on - strand, within Psest_2925 at 3119.330 kb on + strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.331 kb on - strand, within Psest_2925 at 3119.415 kb on - strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.483 kb on + strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.484 kb on - strand, within Psest_2925 at 3119.525 kb on + strand, within Psest_2925 at 3119.526 kb on - strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.567 kb on + strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.568 kb on - strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.606 kb on + strand, within Psest_2925 at 3119.607 kb on - strand, within Psest_2925 at 3119.607 kb on - strand, within Psest_2925 at 3119.607 kb on - strand, within Psest_2925 at 3119.729 kb on + strand at 3119.788 kb on + strand at 3119.789 kb on - strand at 3119.823 kb on + strand at 3119.824 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 3,117,389 + Psest_2922 0.88 -0.1 3,117,389 + Psest_2922 0.88 +0.1 3,117,390 - Psest_2922 0.88 +0.4 3,117,390 - Psest_2922 0.88 -0.4 3,117,390 - Psest_2922 0.88 +0.7 3,117,390 - Psest_2922 0.88 +0.8 3,117,393 + Psest_2922 0.88 +0.7 3,117,393 + Psest_2922 0.88 +0.9 3,117,393 + Psest_2922 0.88 -0.3 3,117,393 + Psest_2922 0.88 -0.3 3,117,393 + Psest_2922 0.88 +0.7 3,117,394 - Psest_2922 0.88 -0.2 3,117,394 - Psest_2922 0.88 -0.5 3,117,394 - Psest_2922 0.88 -1.7 3,117,409 + Psest_2922 0.88 +1.0 3,117,562 + -0.9 3,117,562 + +1.2 3,117,600 + +1.0 3,117,600 + +1.6 3,117,601 - +1.4 3,117,860 + -2.4 3,117,861 - -1.1 3,117,861 - +0.8 3,117,861 - +0.4 3,117,924 + +0.3 3,117,924 + +0.9 3,117,924 + +0.5 3,117,924 + -0.7 3,117,924 + -2.8 3,117,924 + -0.1 3,117,924 + -0.4 3,117,924 + -0.2 3,117,924 + -0.4 3,117,925 - -1.1 3,117,925 - -1.6 3,117,925 - -1.6 3,117,925 - -1.9 3,117,925 - -0.5 3,118,066 + Psest_2923 0.32 -0.4 3,118,066 + Psest_2923 0.32 -1.3 3,118,268 + +0.2 3,118,509 - Psest_2924 0.32 -0.1 3,118,529 + Psest_2924 0.35 -0.1 3,118,530 - Psest_2924 0.35 +0.8 3,118,727 + Psest_2924 0.64 -2.4 3,118,727 + Psest_2924 0.64 +1.4 3,118,727 + Psest_2924 0.64 +0.7 3,118,859 + Psest_2924 0.82 +1.0 3,118,860 - Psest_2924 0.83 +1.4 3,118,898 + Psest_2924 0.88 +1.2 3,118,898 + Psest_2924 0.88 -0.3 3,118,980 - -0.1 3,119,163 + Psest_2925 0.22 +0.1 3,119,164 - Psest_2925 0.22 -0.2 3,119,330 + Psest_2925 0.42 +0.5 3,119,331 - Psest_2925 0.43 +0.2 3,119,331 - Psest_2925 0.43 -0.7 3,119,331 - Psest_2925 0.43 -1.7 3,119,331 - Psest_2925 0.43 -0.5 3,119,415 - Psest_2925 0.53 +1.1 3,119,483 + Psest_2925 0.61 +1.7 3,119,483 + Psest_2925 0.61 +0.5 3,119,483 + Psest_2925 0.61 -0.9 3,119,483 + Psest_2925 0.61 -0.2 3,119,483 + Psest_2925 0.61 -1.2 3,119,484 - Psest_2925 0.61 -0.9 3,119,484 - Psest_2925 0.61 -0.4 3,119,484 - Psest_2925 0.61 +0.8 3,119,484 - Psest_2925 0.61 -0.4 3,119,484 - Psest_2925 0.61 +0.8 3,119,484 - Psest_2925 0.61 -1.2 3,119,484 - Psest_2925 0.61 +0.4 3,119,484 - Psest_2925 0.61 -0.4 3,119,484 - Psest_2925 0.61 +1.4 3,119,484 - Psest_2925 0.61 +0.4 3,119,484 - Psest_2925 0.61 -0.2 3,119,484 - Psest_2925 0.61 -2.5 3,119,525 + Psest_2925 0.66 +1.4 3,119,526 - Psest_2925 0.66 +0.2 3,119,567 + Psest_2925 0.71 -1.3 3,119,567 + Psest_2925 0.71 +0.4 3,119,567 + Psest_2925 0.71 -0.3 3,119,567 + Psest_2925 0.71 -2.4 3,119,568 - Psest_2925 0.72 -0.1 3,119,568 - Psest_2925 0.72 +2.7 3,119,568 - Psest_2925 0.72 -1.4 3,119,568 - Psest_2925 0.72 +0.9 3,119,606 + Psest_2925 0.76 -2.4 3,119,606 + Psest_2925 0.76 +0.1 3,119,606 + Psest_2925 0.76 -0.4 3,119,606 + Psest_2925 0.76 +1.4 3,119,606 + Psest_2925 0.76 +1.1 3,119,607 - Psest_2925 0.76 -0.8 3,119,607 - Psest_2925 0.76 +0.7 3,119,607 - Psest_2925 0.76 -0.3 3,119,729 + -0.5 3,119,788 + -1.2 3,119,789 - -0.1 3,119,823 + +0.1 3,119,824 - +0.1
Or see this region's nucleotide sequence