Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2717

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2716 and Psest_2717 are separated by 85 nucleotidesPsest_2717 and Psest_2718 are separated by 12 nucleotidesPsest_2718 and Psest_2719 are separated by 55 nucleotides Psest_2716: Psest_2716 - ABC-type multidrug transport system, ATPase component, at 2,905,367 to 2,906,296 _2716 Psest_2717: Psest_2717 - Succinylglutamate desuccinylase, at 2,906,382 to 2,907,380 _2717 Psest_2718: Psest_2718 - hypothetical protein, at 2,907,393 to 2,907,674 _2718 Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950 _2719 Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2905.509 kb on - strand, within Psest_2716at 2905.555 kb on + strand, within Psest_2716at 2905.556 kb on - strand, within Psest_2716at 2906.256 kb on + strandat 2906.256 kb on + strandat 2906.256 kb on + strandat 2906.256 kb on + strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.291 kb on - strandat 2906.296 kb on + strandat 2906.330 kb on + strandat 2906.330 kb on + strandat 2906.330 kb on + strandat 2906.331 kb on - strandat 2906.331 kb on - strandat 2906.335 kb on - strandat 2906.420 kb on + strandat 2906.421 kb on - strandat 2906.421 kb on - strandat 2906.938 kb on + strand, within Psest_2717at 2906.939 kb on - strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.508 kb on + strand, within Psest_2718at 2907.535 kb on - strand, within Psest_2718at 2907.577 kb on - strand, within Psest_2718at 2907.676 kb on + strandat 2907.676 kb on + strandat 2907.676 kb on + strandat 2907.677 kb on - strandat 2907.677 kb on - strandat 2907.965 kb on + strand, within Psest_2719at 2908.230 kb on - strand, within Psest_2719at 2908.329 kb on - strand, within Psest_2719

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,905,509 - Psest_2716 0.15 +0.9
2,905,555 + Psest_2716 0.20 +0.7
2,905,556 - Psest_2716 0.20 +1.1
2,906,256 + +0.5
2,906,256 + -0.4
2,906,256 + +0.7
2,906,256 + -0.9
2,906,257 - -1.6
2,906,257 - +0.4
2,906,257 - -2.5
2,906,257 - -0.8
2,906,257 - +0.4
2,906,257 - -0.2
2,906,291 - +1.6
2,906,296 + +0.3
2,906,330 + -2.2
2,906,330 + +0.7
2,906,330 + -0.0
2,906,331 - +0.9
2,906,331 - -0.2
2,906,335 - -3.0
2,906,420 + +0.4
2,906,421 - -0.8
2,906,421 - -1.2
2,906,938 + Psest_2717 0.56 +0.5
2,906,939 - Psest_2717 0.56 -1.9
2,907,024 + Psest_2717 0.64 +0.7
2,907,024 + Psest_2717 0.64 -1.8
2,907,024 + Psest_2717 0.64 +1.2
2,907,025 - Psest_2717 0.64 +0.3
2,907,025 - Psest_2717 0.64 +1.8
2,907,025 - Psest_2717 0.64 +1.5
2,907,183 + Psest_2717 0.80 +0.9
2,907,183 + Psest_2717 0.80 +1.2
2,907,183 + Psest_2717 0.80 +0.5
2,907,183 + Psest_2717 0.80 +1.3
2,907,183 + Psest_2717 0.80 -0.6
2,907,183 + Psest_2717 0.80 -0.1
2,907,183 + Psest_2717 0.80 +0.2
2,907,183 + Psest_2717 0.80 +0.3
2,907,183 + Psest_2717 0.80 -0.0
2,907,184 - Psest_2717 0.80 +0.7
2,907,184 - Psest_2717 0.80 +2.0
2,907,184 - Psest_2717 0.80 +0.6
2,907,184 - Psest_2717 0.80 +2.0
2,907,184 - Psest_2717 0.80 +0.3
2,907,184 - Psest_2717 0.80 -0.1
2,907,184 - Psest_2717 0.80 +1.5
2,907,184 - Psest_2717 0.80 +0.5
2,907,508 + Psest_2718 0.41 -1.2
2,907,535 - Psest_2718 0.50 +0.9
2,907,577 - Psest_2718 0.65 +2.0
2,907,676 + -0.8
2,907,676 + -0.1
2,907,676 + -2.8
2,907,677 - +0.2
2,907,677 - -1.8
2,907,965 + Psest_2719 0.19 +0.8
2,908,230 - Psest_2719 0.41 +1.6
2,908,329 - Psest_2719 0.49 +0.7

Or see this region's nucleotide sequence