Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2716

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2714 and Psest_2715 are separated by 93 nucleotidesPsest_2715 and Psest_2716 overlap by 4 nucleotidesPsest_2716 and Psest_2717 are separated by 85 nucleotides Psest_2714: Psest_2714 - 7-cyano-7-deazaguanine reductase, at 2,903,667 to 2,904,497 _2714 Psest_2715: Psest_2715 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 2,904,591 to 2,905,370 _2715 Psest_2716: Psest_2716 - ABC-type multidrug transport system, ATPase component, at 2,905,367 to 2,906,296 _2716 Psest_2717: Psest_2717 - Succinylglutamate desuccinylase, at 2,906,382 to 2,907,380 _2717 Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2904.440 kb on - strandat 2904.440 kb on - strandat 2904.640 kb on + strandat 2904.640 kb on + strandat 2904.687 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2904.797 kb on - strand, within Psest_2715at 2905.088 kb on + strand, within Psest_2715at 2905.180 kb on + strand, within Psest_2715at 2905.180 kb on + strand, within Psest_2715at 2905.180 kb on + strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.181 kb on - strand, within Psest_2715at 2905.189 kb on + strand, within Psest_2715at 2905.190 kb on - strand, within Psest_2715at 2905.190 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.250 kb on - strand, within Psest_2715at 2905.304 kb on - strandat 2905.509 kb on - strand, within Psest_2716at 2905.555 kb on + strand, within Psest_2716at 2905.556 kb on - strand, within Psest_2716at 2906.256 kb on + strandat 2906.256 kb on + strandat 2906.256 kb on + strandat 2906.256 kb on + strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.257 kb on - strandat 2906.291 kb on - strandat 2906.296 kb on + strandat 2906.330 kb on + strandat 2906.330 kb on + strandat 2906.330 kb on + strandat 2906.331 kb on - strandat 2906.331 kb on - strandat 2906.335 kb on - strandat 2906.420 kb on + strandat 2906.421 kb on - strandat 2906.421 kb on - strandat 2906.938 kb on + strand, within Psest_2717at 2906.939 kb on - strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.024 kb on + strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.025 kb on - strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.183 kb on + strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717at 2907.184 kb on - strand, within Psest_2717

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,904,440 - +0.2
2,904,440 - -0.8
2,904,640 + -0.1
2,904,640 + -0.9
2,904,687 - Psest_2715 0.12 +2.0
2,904,797 - Psest_2715 0.26 +0.4
2,904,797 - Psest_2715 0.26 +1.9
2,904,797 - Psest_2715 0.26 +0.1
2,904,797 - Psest_2715 0.26 +0.5
2,905,088 + Psest_2715 0.64 -1.6
2,905,180 + Psest_2715 0.76 +1.7
2,905,180 + Psest_2715 0.76 +0.6
2,905,180 + Psest_2715 0.76 -0.3
2,905,181 - Psest_2715 0.76 -1.2
2,905,181 - Psest_2715 0.76 +0.7
2,905,181 - Psest_2715 0.76 -0.8
2,905,181 - Psest_2715 0.76 +1.2
2,905,181 - Psest_2715 0.76 +0.3
2,905,181 - Psest_2715 0.76 +0.1
2,905,181 - Psest_2715 0.76 -1.5
2,905,189 + Psest_2715 0.77 -1.8
2,905,190 - Psest_2715 0.77 +2.1
2,905,190 - Psest_2715 0.77 +2.7
2,905,250 - Psest_2715 0.84 +0.9
2,905,250 - Psest_2715 0.84 -0.4
2,905,250 - Psest_2715 0.84 +0.1
2,905,250 - Psest_2715 0.84 +1.8
2,905,304 - +0.3
2,905,509 - Psest_2716 0.15 +0.9
2,905,555 + Psest_2716 0.20 +0.7
2,905,556 - Psest_2716 0.20 +1.1
2,906,256 + +0.5
2,906,256 + -0.4
2,906,256 + +0.7
2,906,256 + -0.9
2,906,257 - -1.6
2,906,257 - +0.4
2,906,257 - -2.5
2,906,257 - -0.8
2,906,257 - +0.4
2,906,257 - -0.2
2,906,291 - +1.6
2,906,296 + +0.3
2,906,330 + -2.2
2,906,330 + +0.7
2,906,330 + -0.0
2,906,331 - +0.9
2,906,331 - -0.2
2,906,335 - -3.0
2,906,420 + +0.4
2,906,421 - -0.8
2,906,421 - -1.2
2,906,938 + Psest_2717 0.56 +0.5
2,906,939 - Psest_2717 0.56 -1.9
2,907,024 + Psest_2717 0.64 +0.7
2,907,024 + Psest_2717 0.64 -1.8
2,907,024 + Psest_2717 0.64 +1.2
2,907,025 - Psest_2717 0.64 +0.3
2,907,025 - Psest_2717 0.64 +1.8
2,907,025 - Psest_2717 0.64 +1.5
2,907,183 + Psest_2717 0.80 +0.9
2,907,183 + Psest_2717 0.80 +1.2
2,907,183 + Psest_2717 0.80 +0.5
2,907,183 + Psest_2717 0.80 +1.3
2,907,183 + Psest_2717 0.80 -0.6
2,907,183 + Psest_2717 0.80 -0.1
2,907,183 + Psest_2717 0.80 +0.2
2,907,183 + Psest_2717 0.80 +0.3
2,907,183 + Psest_2717 0.80 -0.0
2,907,184 - Psest_2717 0.80 +0.7
2,907,184 - Psest_2717 0.80 +2.0
2,907,184 - Psest_2717 0.80 +0.6
2,907,184 - Psest_2717 0.80 +2.0
2,907,184 - Psest_2717 0.80 +0.3
2,907,184 - Psest_2717 0.80 -0.1
2,907,184 - Psest_2717 0.80 +1.5
2,907,184 - Psest_2717 0.80 +0.5

Or see this region's nucleotide sequence