Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0266

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0264 and Psest_0265 are separated by 68 nucleotidesPsest_0265 and Psest_0266 are separated by 88 nucleotidesPsest_0266 and Psest_0267 are separated by 74 nucleotidesPsest_0267 and Psest_0268 are separated by 65 nucleotides Psest_0264: Psest_0264 - monofunctional biosynthetic peptidoglycan transglycosylase, at 281,399 to 282,127 _0264 Psest_0265: Psest_0265 - Uncharacterized small membrane protein, at 282,196 to 282,570 _0265 Psest_0266: Psest_0266 - thiamine biosynthesis protein ThiS, at 282,659 to 282,859 _0266 Psest_0267: Psest_0267 - Uncharacterized enzyme of thiazole biosynthesis, at 282,934 to 283,728 _0267 Psest_0268: Psest_0268 - tRNA (guanine-N(7)-)-methyltransferase, at 283,794 to 284,510 _0268 Position (kb) 282 283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 281.673 kb on + strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.673 kb on + strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.674 kb on - strand, within Psest_0264at 281.974 kb on + strand, within Psest_0264at 282.056 kb on + strandat 282.056 kb on + strandat 282.057 kb on - strandat 282.057 kb on - strandat 282.160 kb on + strandat 282.160 kb on + strandat 282.160 kb on + strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.161 kb on - strandat 282.162 kb on + strandat 282.163 kb on - strandat 282.208 kb on + strandat 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.299 kb on - strand, within Psest_0265at 282.329 kb on - strand, within Psest_0265at 282.454 kb on + strand, within Psest_0265at 282.454 kb on + strand, within Psest_0265at 282.455 kb on - strand, within Psest_0265at 282.622 kb on - strandat 282.686 kb on + strand, within Psest_0266at 282.686 kb on + strand, within Psest_0266at 282.687 kb on - strand, within Psest_0266at 282.726 kb on + strand, within Psest_0266at 282.727 kb on - strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.837 kb on + strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.838 kb on - strand, within Psest_0266at 282.889 kb on + strandat 282.890 kb on - strandat 282.892 kb on - strandat 282.909 kb on + strandat 282.909 kb on + strandat 282.910 kb on - strandat 282.982 kb on + strandat 282.982 kb on + strandat 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.015 kb on + strand, within Psest_0267at 283.150 kb on + strand, within Psest_0267at 283.151 kb on - strand, within Psest_0267at 283.280 kb on + strand, within Psest_0267at 283.280 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.351 kb on + strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.352 kb on - strand, within Psest_0267at 283.459 kb on + strand, within Psest_0267at 283.459 kb on + strand, within Psest_0267at 283.460 kb on - strand, within Psest_0267at 283.460 kb on - strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.630 kb on + strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.631 kb on - strand, within Psest_0267at 283.658 kb on - strandat 283.687 kb on + strandat 283.788 kb on + strandat 283.788 kb on + strandat 283.789 kb on - strandat 283.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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281,673 + Psest_0264 0.38 +2.3
281,673 + Psest_0264 0.38 +0.4
281,673 + Psest_0264 0.38 -1.0
281,673 + Psest_0264 0.38 -1.6
281,674 - Psest_0264 0.38 +1.7
281,674 - Psest_0264 0.38 +1.4
281,674 - Psest_0264 0.38 -0.4
281,674 - Psest_0264 0.38 +2.0
281,674 - Psest_0264 0.38 +1.8
281,674 - Psest_0264 0.38 +1.6
281,674 - Psest_0264 0.38 +1.3
281,674 - Psest_0264 0.38 +2.2
281,974 + Psest_0264 0.79 +0.8
282,056 + +0.2
282,056 + +1.0
282,057 - -0.8
282,057 - +1.1
282,160 + -0.0
282,160 + +1.3
282,160 + -0.3
282,161 - +1.1
282,161 - +1.1
282,161 - +0.6
282,161 - +0.5
282,161 - +1.0
282,162 + +0.9
282,163 - +0.1
282,208 + +0.4
282,299 - Psest_0265 0.27 -0.1
282,299 - Psest_0265 0.27 +1.0
282,299 - Psest_0265 0.27 +1.3
282,299 - Psest_0265 0.27 +0.0
282,299 - Psest_0265 0.27 -0.0
282,299 - Psest_0265 0.27 +1.3
282,329 - Psest_0265 0.35 +1.2
282,454 + Psest_0265 0.69 +1.9
282,454 + Psest_0265 0.69 +0.3
282,455 - Psest_0265 0.69 -1.4
282,622 - -0.5
282,686 + Psest_0266 0.13 -2.9
282,686 + Psest_0266 0.13 -1.8
282,687 - Psest_0266 0.14 -1.0
282,726 + Psest_0266 0.33 -3.4
282,727 - Psest_0266 0.34 -3.6
282,837 + Psest_0266 0.89 -3.9
282,837 + Psest_0266 0.89 +0.4
282,837 + Psest_0266 0.89 -0.0
282,837 + Psest_0266 0.89 -1.9
282,838 - Psest_0266 0.89 -2.3
282,838 - Psest_0266 0.89 -2.3
282,838 - Psest_0266 0.89 -3.0
282,838 - Psest_0266 0.89 -1.6
282,838 - Psest_0266 0.89 -2.3
282,838 - Psest_0266 0.89 -3.5
282,838 - Psest_0266 0.89 -3.2
282,889 + +0.2
282,890 - +0.3
282,892 - +0.7
282,909 + -0.3
282,909 + +0.6
282,910 - +0.5
282,982 + -1.7
282,982 + -2.3
283,015 + Psest_0267 0.10 -3.3
283,015 + Psest_0267 0.10 -3.1
283,015 + Psest_0267 0.10 -3.5
283,015 + Psest_0267 0.10 -1.0
283,150 + Psest_0267 0.27 -2.6
283,151 - Psest_0267 0.27 -3.7
283,280 + Psest_0267 0.44 -2.4
283,280 + Psest_0267 0.44 -2.8
283,351 + Psest_0267 0.52 -3.8
283,351 + Psest_0267 0.52 -2.5
283,351 + Psest_0267 0.52 -1.0
283,352 - Psest_0267 0.53 -2.3
283,352 - Psest_0267 0.53 -2.8
283,352 - Psest_0267 0.53 -1.3
283,352 - Psest_0267 0.53 -3.4
283,352 - Psest_0267 0.53 -2.3
283,352 - Psest_0267 0.53 -2.5
283,352 - Psest_0267 0.53 -2.9
283,352 - Psest_0267 0.53 -2.9
283,352 - Psest_0267 0.53 -3.0
283,352 - Psest_0267 0.53 -3.8
283,459 + Psest_0267 0.66 -3.9
283,459 + Psest_0267 0.66 -3.9
283,460 - Psest_0267 0.66 -2.2
283,460 - Psest_0267 0.66 -2.8
283,630 + Psest_0267 0.88 -4.1
283,630 + Psest_0267 0.88 -3.7
283,630 + Psest_0267 0.88 -2.0
283,630 + Psest_0267 0.88 -2.8
283,630 + Psest_0267 0.88 -1.2
283,630 + Psest_0267 0.88 -2.5
283,631 - Psest_0267 0.88 -4.4
283,631 - Psest_0267 0.88 -3.1
283,631 - Psest_0267 0.88 -2.2
283,658 - -2.3
283,687 + -3.1
283,788 + +0.2
283,788 + +0.7
283,789 - +0.6
283,789 - +0.9

Or see this region's nucleotide sequence