Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2676 and Psest_2677 are separated by 240 nucleotides Psest_2677 and Psest_2678 overlap by 8 nucleotides Psest_2678 and Psest_2679 are separated by 46 nucleotides
Psest_2676: Psest_2676 - Methyl-accepting chemotaxis protein, at 2,864,173 to 2,866,125
_2676
Psest_2677: Psest_2677 - ABC-type multidrug transport system, ATPase and permease components, at 2,866,366 to 2,868,144
_2677
Psest_2678: Psest_2678 - Predicted protein-disulfide isomerase, at 2,868,137 to 2,868,766
_2678
Psest_2679: Psest_2679 - Predicted sulfurtransferase, at 2,868,813 to 2,869,748
_2679
Position (kb)
2866
2867
2868
2869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2865.520 kb on - strand, within Psest_2676 at 2865.520 kb on - strand, within Psest_2676 at 2865.520 kb on - strand, within Psest_2676 at 2865.520 kb on - strand, within Psest_2676 at 2865.609 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.656 kb on + strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.657 kb on - strand, within Psest_2676 at 2865.660 kb on + strand, within Psest_2676 at 2865.661 kb on - strand, within Psest_2676 at 2865.661 kb on - strand, within Psest_2676 at 2865.715 kb on - strand at 2865.715 kb on - strand, within Psest_2676 at 2865.756 kb on - strand, within Psest_2676 at 2865.756 kb on - strand, within Psest_2676 at 2865.756 kb on - strand, within Psest_2676 at 2865.756 kb on - strand, within Psest_2676 at 2865.777 kb on - strand, within Psest_2676 at 2865.810 kb on - strand, within Psest_2676 at 2866.054 kb on + strand at 2866.055 kb on - strand at 2866.055 kb on - strand at 2866.173 kb on + strand at 2866.173 kb on + strand at 2866.173 kb on + strand at 2866.173 kb on + strand at 2866.179 kb on + strand at 2866.180 kb on - strand at 2866.201 kb on - strand at 2866.214 kb on - strand at 2866.240 kb on + strand at 2866.240 kb on + strand at 2866.241 kb on - strand at 2866.397 kb on + strand at 2866.468 kb on + strand at 2866.562 kb on + strand, within Psest_2677 at 2867.011 kb on - strand, within Psest_2677 at 2867.011 kb on - strand, within Psest_2677 at 2867.183 kb on + strand, within Psest_2677 at 2867.183 kb on + strand, within Psest_2677 at 2867.183 kb on + strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.184 kb on - strand, within Psest_2677 at 2867.192 kb on + strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.241 kb on - strand, within Psest_2677 at 2867.314 kb on + strand, within Psest_2677 at 2867.314 kb on + strand, within Psest_2677 at 2867.315 kb on - strand, within Psest_2677 at 2867.323 kb on - strand, within Psest_2677 at 2867.390 kb on + strand, within Psest_2677 at 2867.390 kb on + strand, within Psest_2677 at 2867.390 kb on + strand, within Psest_2677 at 2867.512 kb on - strand, within Psest_2677 at 2867.512 kb on - strand, within Psest_2677 at 2867.542 kb on + strand, within Psest_2677 at 2867.542 kb on + strand, within Psest_2677 at 2867.587 kb on - strand, within Psest_2677 at 2867.899 kb on + strand, within Psest_2677 at 2867.899 kb on + strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.900 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.902 kb on - strand, within Psest_2677 at 2867.921 kb on + strand, within Psest_2677 at 2867.922 kb on - strand, within Psest_2677 at 2867.979 kb on + strand at 2867.979 kb on + strand at 2867.980 kb on - strand at 2867.992 kb on + strand at 2867.992 kb on + strand at 2867.992 kb on + strand at 2868.023 kb on - strand at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.417 kb on + strand, within Psest_2678 at 2868.418 kb on - strand, within Psest_2678 at 2868.455 kb on - strand, within Psest_2678 at 2868.455 kb on - strand, within Psest_2678 at 2868.455 kb on - strand, within Psest_2678 at 2868.586 kb on - strand, within Psest_2678 at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.750 kb on + strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.751 kb on - strand at 2868.781 kb on - strand at 2868.964 kb on + strand, within Psest_2679 at 2868.964 kb on + strand, within Psest_2679 at 2869.124 kb on - strand, within Psest_2679
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,865,520 - Psest_2676 0.69 -0.2 2,865,520 - Psest_2676 0.69 -0.1 2,865,520 - Psest_2676 0.69 -0.6 2,865,520 - Psest_2676 0.69 +0.1 2,865,609 + Psest_2676 0.74 -1.0 2,865,656 + Psest_2676 0.76 -1.1 2,865,656 + Psest_2676 0.76 -2.3 2,865,656 + Psest_2676 0.76 -0.1 2,865,656 + Psest_2676 0.76 -1.8 2,865,656 + Psest_2676 0.76 +0.2 2,865,656 + Psest_2676 0.76 -1.1 2,865,656 + Psest_2676 0.76 -1.3 2,865,656 + Psest_2676 0.76 -0.3 2,865,656 + Psest_2676 0.76 +2.0 2,865,656 + Psest_2676 0.76 -0.6 2,865,657 - Psest_2676 0.76 -2.7 2,865,657 - Psest_2676 0.76 -0.6 2,865,657 - Psest_2676 0.76 +0.2 2,865,657 - Psest_2676 0.76 +0.5 2,865,657 - Psest_2676 0.76 -1.0 2,865,657 - Psest_2676 0.76 -2.6 2,865,657 - Psest_2676 0.76 -0.3 2,865,657 - Psest_2676 0.76 -1.8 2,865,657 - Psest_2676 0.76 -2.0 2,865,657 - Psest_2676 0.76 +0.7 2,865,660 + Psest_2676 0.76 -1.6 2,865,661 - Psest_2676 0.76 -0.4 2,865,661 - Psest_2676 0.76 +0.4 2,865,715 - -0.6 2,865,715 - Psest_2676 0.79 +0.2 2,865,756 - Psest_2676 0.81 +0.2 2,865,756 - Psest_2676 0.81 -0.8 2,865,756 - Psest_2676 0.81 -0.8 2,865,756 - Psest_2676 0.81 -0.7 2,865,777 - Psest_2676 0.82 -1.0 2,865,810 - Psest_2676 0.84 -1.2 2,866,054 + +0.5 2,866,055 - +0.0 2,866,055 - +0.6 2,866,173 + -0.3 2,866,173 + -0.4 2,866,173 + -1.3 2,866,173 + -2.3 2,866,179 + -0.7 2,866,180 - -1.6 2,866,201 - -2.2 2,866,214 - -3.1 2,866,240 + -1.6 2,866,240 + -1.4 2,866,241 - -1.5 2,866,397 + +1.4 2,866,468 + -1.6 2,866,562 + Psest_2677 0.11 -0.9 2,867,011 - Psest_2677 0.36 -0.8 2,867,011 - Psest_2677 0.36 -0.6 2,867,183 + Psest_2677 0.46 -0.1 2,867,183 + Psest_2677 0.46 -0.9 2,867,183 + Psest_2677 0.46 +0.7 2,867,184 - Psest_2677 0.46 -0.8 2,867,184 - Psest_2677 0.46 +0.1 2,867,184 - Psest_2677 0.46 +1.0 2,867,184 - Psest_2677 0.46 +0.6 2,867,192 + Psest_2677 0.46 +0.4 2,867,241 - Psest_2677 0.49 -0.9 2,867,241 - Psest_2677 0.49 +0.4 2,867,241 - Psest_2677 0.49 -1.7 2,867,241 - Psest_2677 0.49 +0.4 2,867,241 - Psest_2677 0.49 +0.2 2,867,314 + Psest_2677 0.53 -1.5 2,867,314 + Psest_2677 0.53 -1.3 2,867,315 - Psest_2677 0.53 -0.4 2,867,323 - Psest_2677 0.54 -1.1 2,867,390 + Psest_2677 0.58 -0.2 2,867,390 + Psest_2677 0.58 -2.0 2,867,390 + Psest_2677 0.58 -0.6 2,867,512 - Psest_2677 0.64 -0.3 2,867,512 - Psest_2677 0.64 -0.4 2,867,542 + Psest_2677 0.66 -2.0 2,867,542 + Psest_2677 0.66 -1.1 2,867,587 - Psest_2677 0.69 -1.8 2,867,899 + Psest_2677 0.86 -1.0 2,867,899 + Psest_2677 0.86 -1.1 2,867,900 - Psest_2677 0.86 +0.6 2,867,900 - Psest_2677 0.86 -0.3 2,867,900 - Psest_2677 0.86 +0.2 2,867,900 - Psest_2677 0.86 -0.4 2,867,902 - Psest_2677 0.86 +0.0 2,867,902 - Psest_2677 0.86 -0.4 2,867,902 - Psest_2677 0.86 +1.0 2,867,902 - Psest_2677 0.86 -0.9 2,867,921 + Psest_2677 0.87 -1.3 2,867,922 - Psest_2677 0.87 +1.0 2,867,979 + -2.1 2,867,979 + -1.9 2,867,980 - -0.4 2,867,992 + -0.6 2,867,992 + -1.6 2,867,992 + -0.3 2,868,023 - -0.1 2,868,417 + Psest_2678 0.44 +0.1 2,868,417 + Psest_2678 0.44 -0.1 2,868,417 + Psest_2678 0.44 -1.0 2,868,417 + Psest_2678 0.44 -0.3 2,868,417 + Psest_2678 0.44 -0.7 2,868,417 + Psest_2678 0.44 +1.9 2,868,418 - Psest_2678 0.45 -1.0 2,868,455 - Psest_2678 0.50 -1.3 2,868,455 - Psest_2678 0.50 -0.2 2,868,455 - Psest_2678 0.50 +0.0 2,868,586 - Psest_2678 0.71 -1.9 2,868,750 + -1.6 2,868,750 + -1.9 2,868,750 + +0.1 2,868,750 + +0.0 2,868,750 + -1.1 2,868,750 + -0.6 2,868,750 + -1.2 2,868,751 - -0.6 2,868,751 - +0.1 2,868,751 - -1.3 2,868,751 - +0.6 2,868,751 - -0.9 2,868,751 - -0.4 2,868,751 - -1.3 2,868,751 - -2.4 2,868,751 - -0.9 2,868,781 - -0.4 2,868,964 + Psest_2679 0.16 -1.6 2,868,964 + Psest_2679 0.16 -1.3 2,869,124 - Psest_2679 0.33 +0.8
Or see this region's nucleotide sequence