Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2649 and Psest_2650 are separated by 16 nucleotides Psest_2650 and Psest_2651 are separated by 144 nucleotides
Psest_2649: Psest_2649 - Predicted permease, DMT superfamily, at 2,830,678 to 2,831,517
_2649
Psest_2650: Psest_2650 - hypothetical protein, at 2,831,534 to 2,832,052
_2650
Psest_2651: Psest_2651 - DNA topoisomerase I, bacterial, at 2,832,197 to 2,834,800
_2651
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2830.628 kb on + strand at 2830.628 kb on + strand at 2830.628 kb on + strand at 2830.629 kb on - strand at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.924 kb on + strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.925 kb on - strand, within Psest_2649 at 2830.926 kb on + strand, within Psest_2649 at 2830.926 kb on + strand, within Psest_2649 at 2830.926 kb on + strand, within Psest_2649 at 2830.926 kb on + strand, within Psest_2649 at 2830.926 kb on + strand, within Psest_2649 at 2830.927 kb on - strand, within Psest_2649 at 2830.927 kb on - strand, within Psest_2649 at 2831.149 kb on + strand, within Psest_2649 at 2831.149 kb on + strand, within Psest_2649 at 2831.149 kb on + strand, within Psest_2649 at 2831.149 kb on + strand, within Psest_2649 at 2831.149 kb on + strand, within Psest_2649 at 2831.149 kb on + strand, within Psest_2649 at 2831.150 kb on - strand, within Psest_2649 at 2831.150 kb on - strand, within Psest_2649 at 2831.284 kb on + strand, within Psest_2649 at 2831.284 kb on + strand, within Psest_2649 at 2831.336 kb on - strand, within Psest_2649 at 2831.361 kb on + strand, within Psest_2649 at 2831.363 kb on + strand, within Psest_2649 at 2831.364 kb on - strand, within Psest_2649 at 2831.364 kb on - strand, within Psest_2649 at 2831.420 kb on + strand, within Psest_2649 at 2831.565 kb on - strand at 2831.565 kb on - strand at 2831.718 kb on + strand, within Psest_2650 at 2831.718 kb on + strand, within Psest_2650 at 2831.719 kb on - strand, within Psest_2650 at 2831.719 kb on - strand, within Psest_2650 at 2831.726 kb on - strand, within Psest_2650 at 2832.036 kb on + strand at 2832.036 kb on + strand at 2832.282 kb on + strand at 2832.367 kb on - strand at 2832.489 kb on + strand, within Psest_2651 at 2832.489 kb on + strand, within Psest_2651 at 2832.489 kb on + strand, within Psest_2651 at 2832.489 kb on + strand, within Psest_2651 at 2832.489 kb on + strand, within Psest_2651 at 2832.489 kb on + strand, within Psest_2651 at 2832.489 kb on + strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651 at 2832.490 kb on - strand, within Psest_2651
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,830,628 + +0.7 2,830,628 + +0.4 2,830,628 + -0.5 2,830,629 - -0.5 2,830,924 + Psest_2649 0.29 +0.4 2,830,924 + Psest_2649 0.29 -0.1 2,830,924 + Psest_2649 0.29 +0.1 2,830,924 + Psest_2649 0.29 -0.1 2,830,924 + Psest_2649 0.29 -0.6 2,830,924 + Psest_2649 0.29 +0.8 2,830,924 + Psest_2649 0.29 +0.6 2,830,924 + Psest_2649 0.29 -0.0 2,830,924 + Psest_2649 0.29 +0.5 2,830,924 + Psest_2649 0.29 -1.5 2,830,924 + Psest_2649 0.29 +0.5 2,830,924 + Psest_2649 0.29 -1.2 2,830,925 - Psest_2649 0.29 -0.2 2,830,925 - Psest_2649 0.29 +0.0 2,830,925 - Psest_2649 0.29 +0.9 2,830,925 - Psest_2649 0.29 -1.4 2,830,925 - Psest_2649 0.29 +0.7 2,830,925 - Psest_2649 0.29 -0.6 2,830,925 - Psest_2649 0.29 +0.4 2,830,925 - Psest_2649 0.29 -1.8 2,830,926 + Psest_2649 0.30 -1.5 2,830,926 + Psest_2649 0.30 +0.5 2,830,926 + Psest_2649 0.30 +0.2 2,830,926 + Psest_2649 0.30 +0.9 2,830,926 + Psest_2649 0.30 -0.1 2,830,927 - Psest_2649 0.30 -0.1 2,830,927 - Psest_2649 0.30 -1.2 2,831,149 + Psest_2649 0.56 -0.1 2,831,149 + Psest_2649 0.56 -2.2 2,831,149 + Psest_2649 0.56 +0.2 2,831,149 + Psest_2649 0.56 -2.5 2,831,149 + Psest_2649 0.56 -2.2 2,831,149 + Psest_2649 0.56 -0.5 2,831,150 - Psest_2649 0.56 +0.1 2,831,150 - Psest_2649 0.56 -1.0 2,831,284 + Psest_2649 0.72 +0.5 2,831,284 + Psest_2649 0.72 +1.8 2,831,336 - Psest_2649 0.78 -1.0 2,831,361 + Psest_2649 0.81 -0.3 2,831,363 + Psest_2649 0.82 -0.9 2,831,364 - Psest_2649 0.82 -0.9 2,831,364 - Psest_2649 0.82 -0.9 2,831,420 + Psest_2649 0.88 -1.6 2,831,565 - -0.8 2,831,565 - -0.1 2,831,718 + Psest_2650 0.35 -2.8 2,831,718 + Psest_2650 0.35 -1.8 2,831,719 - Psest_2650 0.36 -1.2 2,831,719 - Psest_2650 0.36 +0.0 2,831,726 - Psest_2650 0.37 -2.1 2,832,036 + -0.3 2,832,036 + -0.7 2,832,282 + -0.5 2,832,367 - -0.9 2,832,489 + Psest_2651 0.11 +1.9 2,832,489 + Psest_2651 0.11 -1.1 2,832,489 + Psest_2651 0.11 -0.2 2,832,489 + Psest_2651 0.11 +0.1 2,832,489 + Psest_2651 0.11 +1.5 2,832,489 + Psest_2651 0.11 +1.1 2,832,489 + Psest_2651 0.11 -1.3 2,832,490 - Psest_2651 0.11 -0.7 2,832,490 - Psest_2651 0.11 +1.9 2,832,490 - Psest_2651 0.11 -1.5 2,832,490 - Psest_2651 0.11 +1.1 2,832,490 - Psest_2651 0.11 -2.0 2,832,490 - Psest_2651 0.11 -1.2 2,832,490 - Psest_2651 0.11 -0.0 2,832,490 - Psest_2651 0.11 -0.4
Or see this region's nucleotide sequence