Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2636 and Psest_2637 are separated by 112 nucleotides Psest_2637 and Psest_2638 are separated by 18 nucleotides Psest_2638 and Psest_2639 are separated by 80 nucleotides Psest_2639 and Psest_2640 are separated by 7 nucleotides Psest_2640 and Psest_2641 are separated by 7 nucleotides
Psest_2636: Psest_2636 - tryptophan synthase, beta subunit, at 2,819,841 to 2,821,049
_2636
Psest_2637: Psest_2637 - putative methyltransferase, YaeB/AF_0241 family, at 2,821,162 to 2,821,869
_2637
Psest_2638: Psest_2638 - Protein related to penicillin acylase, at 2,821,888 to 2,824,425
_2638
Psest_2639: Psest_2639 - Protein of unknown function (DUF2489)., at 2,824,506 to 2,824,967
_2639
Psest_2640: Psest_2640 - Preprotein translocase subunit SecA (ATPase, RNA helicase), at 2,824,975 to 2,825,163
_2640
Psest_2641: Psest_2641 - Conserved secreted protein, at 2,825,171 to 2,825,668
_2641
Position (kb)
2821
2822
2823
2824
2825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2820.980 kb on + strand at 2820.994 kb on + strand at 2820.994 kb on + strand at 2820.994 kb on + strand at 2820.994 kb on + strand at 2820.995 kb on - strand at 2820.995 kb on - strand at 2821.023 kb on + strand at 2821.047 kb on + strand at 2821.558 kb on + strand, within Psest_2637 at 2821.559 kb on - strand, within Psest_2637 at 2821.970 kb on + strand at 2821.970 kb on + strand at 2821.970 kb on + strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2821.971 kb on - strand at 2822.044 kb on - strand at 2822.044 kb on - strand at 2822.135 kb on + strand at 2822.155 kb on - strand, within Psest_2638 at 2822.195 kb on + strand, within Psest_2638 at 2822.195 kb on + strand, within Psest_2638 at 2822.239 kb on - strand, within Psest_2638 at 2822.398 kb on - strand, within Psest_2638 at 2822.460 kb on - strand, within Psest_2638 at 2822.516 kb on - strand, within Psest_2638 at 2822.564 kb on + strand, within Psest_2638 at 2822.564 kb on + strand, within Psest_2638 at 2822.565 kb on - strand, within Psest_2638 at 2822.816 kb on + strand, within Psest_2638 at 2823.281 kb on + strand, within Psest_2638 at 2823.281 kb on + strand, within Psest_2638 at 2823.281 kb on + strand, within Psest_2638 at 2823.282 kb on - strand, within Psest_2638 at 2823.282 kb on - strand, within Psest_2638 at 2823.320 kb on + strand, within Psest_2638 at 2823.320 kb on + strand, within Psest_2638 at 2823.320 kb on + strand, within Psest_2638 at 2823.320 kb on + strand, within Psest_2638 at 2823.320 kb on + strand, within Psest_2638 at 2823.321 kb on - strand, within Psest_2638 at 2823.321 kb on - strand, within Psest_2638 at 2823.321 kb on - strand, within Psest_2638 at 2823.321 kb on - strand, within Psest_2638 at 2823.355 kb on - strand, within Psest_2638 at 2823.368 kb on + strand, within Psest_2638 at 2823.368 kb on + strand, within Psest_2638 at 2823.368 kb on + strand, within Psest_2638 at 2823.368 kb on + strand, within Psest_2638 at 2823.369 kb on - strand, within Psest_2638 at 2823.407 kb on + strand, within Psest_2638 at 2823.407 kb on + strand, within Psest_2638 at 2823.407 kb on + strand, within Psest_2638 at 2823.408 kb on - strand, within Psest_2638 at 2823.408 kb on - strand, within Psest_2638 at 2823.529 kb on + strand, within Psest_2638 at 2823.529 kb on + strand, within Psest_2638 at 2823.530 kb on - strand, within Psest_2638 at 2823.548 kb on + strand, within Psest_2638 at 2823.776 kb on + strand, within Psest_2638 at 2823.776 kb on + strand, within Psest_2638 at 2823.826 kb on + strand, within Psest_2638 at 2823.914 kb on + strand, within Psest_2638 at 2823.914 kb on + strand, within Psest_2638 at 2823.926 kb on + strand, within Psest_2638 at 2823.926 kb on + strand, within Psest_2638 at 2823.927 kb on - strand, within Psest_2638 at 2823.927 kb on - strand, within Psest_2638 at 2823.977 kb on + strand, within Psest_2638 at 2823.978 kb on - strand, within Psest_2638 at 2823.998 kb on + strand, within Psest_2638 at 2823.999 kb on - strand, within Psest_2638 at 2824.187 kb on + strand at 2824.188 kb on - strand at 2824.188 kb on - strand at 2824.325 kb on + strand at 2824.341 kb on - strand at 2824.474 kb on + strand at 2824.475 kb on - strand at 2824.475 kb on - strand at 2824.577 kb on + strand, within Psest_2639 at 2824.577 kb on + strand, within Psest_2639 at 2824.577 kb on + strand, within Psest_2639 at 2824.577 kb on + strand, within Psest_2639 at 2824.577 kb on + strand, within Psest_2639 at 2824.578 kb on - strand, within Psest_2639 at 2824.578 kb on - strand, within Psest_2639 at 2824.578 kb on - strand, within Psest_2639 at 2824.578 kb on - strand, within Psest_2639 at 2824.732 kb on + strand, within Psest_2639 at 2824.732 kb on + strand, within Psest_2639 at 2824.732 kb on + strand, within Psest_2639 at 2824.732 kb on + strand, within Psest_2639 at 2824.732 kb on + strand, within Psest_2639 at 2824.733 kb on - strand, within Psest_2639 at 2824.733 kb on - strand, within Psest_2639 at 2824.733 kb on - strand, within Psest_2639 at 2824.736 kb on + strand, within Psest_2639 at 2824.736 kb on + strand, within Psest_2639 at 2824.736 kb on + strand, within Psest_2639 at 2824.736 kb on + strand, within Psest_2639 at 2824.736 kb on + strand, within Psest_2639 at 2824.736 kb on + strand, within Psest_2639 at 2824.737 kb on - strand, within Psest_2639 at 2824.737 kb on - strand, within Psest_2639 at 2824.737 kb on - strand, within Psest_2639 at 2824.740 kb on + strand, within Psest_2639 at 2824.897 kb on + strand, within Psest_2639 at 2824.897 kb on + strand, within Psest_2639 at 2824.897 kb on + strand, within Psest_2639 at 2824.898 kb on - strand, within Psest_2639 at 2825.172 kb on + strand at 2825.172 kb on + strand at 2825.172 kb on + strand at 2825.173 kb on - strand at 2825.173 kb on - strand at 2825.198 kb on + strand at 2825.199 kb on - strand at 2825.199 kb on - strand at 2825.199 kb on - strand at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.313 kb on + strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.314 kb on - strand, within Psest_2641 at 2825.355 kb on + strand, within Psest_2641
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,820,980 + +0.1 2,820,994 + -0.0 2,820,994 + +0.1 2,820,994 + -0.9 2,820,994 + +0.5 2,820,995 - -0.6 2,820,995 - -0.2 2,821,023 + +0.8 2,821,047 + -0.7 2,821,558 + Psest_2637 0.56 +0.0 2,821,559 - Psest_2637 0.56 +0.4 2,821,970 + -0.7 2,821,970 + +0.1 2,821,970 + -3.2 2,821,971 - +0.7 2,821,971 - +0.7 2,821,971 - +0.3 2,821,971 - +1.1 2,821,971 - +1.7 2,821,971 - +0.1 2,821,971 - +0.7 2,821,971 - +0.9 2,822,044 - +2.1 2,822,044 - +1.1 2,822,135 + -1.9 2,822,155 - Psest_2638 0.11 -0.1 2,822,195 + Psest_2638 0.12 -1.6 2,822,195 + Psest_2638 0.12 -1.5 2,822,239 - Psest_2638 0.14 +0.5 2,822,398 - Psest_2638 0.20 -2.4 2,822,460 - Psest_2638 0.23 -0.3 2,822,516 - Psest_2638 0.25 +0.4 2,822,564 + Psest_2638 0.27 +0.2 2,822,564 + Psest_2638 0.27 -1.1 2,822,565 - Psest_2638 0.27 -0.1 2,822,816 + Psest_2638 0.37 +0.6 2,823,281 + Psest_2638 0.55 -1.0 2,823,281 + Psest_2638 0.55 -1.2 2,823,281 + Psest_2638 0.55 -1.3 2,823,282 - Psest_2638 0.55 +0.2 2,823,282 - Psest_2638 0.55 +1.1 2,823,320 + Psest_2638 0.56 -0.1 2,823,320 + Psest_2638 0.56 -1.4 2,823,320 + Psest_2638 0.56 +0.5 2,823,320 + Psest_2638 0.56 -0.3 2,823,320 + Psest_2638 0.56 +0.1 2,823,321 - Psest_2638 0.56 -1.2 2,823,321 - Psest_2638 0.56 -0.9 2,823,321 - Psest_2638 0.56 -1.4 2,823,321 - Psest_2638 0.56 +0.7 2,823,355 - Psest_2638 0.58 -0.4 2,823,368 + Psest_2638 0.58 +0.7 2,823,368 + Psest_2638 0.58 -0.9 2,823,368 + Psest_2638 0.58 -0.0 2,823,368 + Psest_2638 0.58 -1.9 2,823,369 - Psest_2638 0.58 +1.1 2,823,407 + Psest_2638 0.60 -1.6 2,823,407 + Psest_2638 0.60 -1.0 2,823,407 + Psest_2638 0.60 -0.6 2,823,408 - Psest_2638 0.60 -0.9 2,823,408 - Psest_2638 0.60 -1.0 2,823,529 + Psest_2638 0.65 -0.3 2,823,529 + Psest_2638 0.65 -2.7 2,823,530 - Psest_2638 0.65 +2.1 2,823,548 + Psest_2638 0.65 -0.5 2,823,776 + Psest_2638 0.74 +0.8 2,823,776 + Psest_2638 0.74 -2.1 2,823,826 + Psest_2638 0.76 -2.7 2,823,914 + Psest_2638 0.80 -0.6 2,823,914 + Psest_2638 0.80 +0.5 2,823,926 + Psest_2638 0.80 -2.4 2,823,926 + Psest_2638 0.80 -0.3 2,823,927 - Psest_2638 0.80 -1.4 2,823,927 - Psest_2638 0.80 +0.1 2,823,977 + Psest_2638 0.82 +0.8 2,823,978 - Psest_2638 0.82 -0.1 2,823,998 + Psest_2638 0.83 -0.1 2,823,999 - Psest_2638 0.83 -0.4 2,824,187 + -2.0 2,824,188 - +0.3 2,824,188 - +0.4 2,824,325 + -0.9 2,824,341 - +1.0 2,824,474 + -1.0 2,824,475 - -2.4 2,824,475 - -0.2 2,824,577 + Psest_2639 0.15 -0.8 2,824,577 + Psest_2639 0.15 -0.9 2,824,577 + Psest_2639 0.15 +2.1 2,824,577 + Psest_2639 0.15 -0.2 2,824,577 + Psest_2639 0.15 -0.9 2,824,578 - Psest_2639 0.16 -0.9 2,824,578 - Psest_2639 0.16 -1.2 2,824,578 - Psest_2639 0.16 +1.1 2,824,578 - Psest_2639 0.16 +0.7 2,824,732 + Psest_2639 0.49 -0.8 2,824,732 + Psest_2639 0.49 -2.0 2,824,732 + Psest_2639 0.49 -1.1 2,824,732 + Psest_2639 0.49 -2.0 2,824,732 + Psest_2639 0.49 -0.3 2,824,733 - Psest_2639 0.49 -1.1 2,824,733 - Psest_2639 0.49 +2.1 2,824,733 - Psest_2639 0.49 -1.7 2,824,736 + Psest_2639 0.50 +0.4 2,824,736 + Psest_2639 0.50 -0.5 2,824,736 + Psest_2639 0.50 -0.2 2,824,736 + Psest_2639 0.50 -1.0 2,824,736 + Psest_2639 0.50 +0.4 2,824,736 + Psest_2639 0.50 +0.1 2,824,737 - Psest_2639 0.50 -2.0 2,824,737 - Psest_2639 0.50 +0.8 2,824,737 - Psest_2639 0.50 +0.4 2,824,740 + Psest_2639 0.51 -2.0 2,824,897 + Psest_2639 0.85 +0.6 2,824,897 + Psest_2639 0.85 -0.6 2,824,897 + Psest_2639 0.85 -2.2 2,824,898 - Psest_2639 0.85 -0.3 2,825,172 + -1.7 2,825,172 + -1.9 2,825,172 + -0.7 2,825,173 - -0.4 2,825,173 - -0.9 2,825,198 + +0.2 2,825,199 - -1.0 2,825,199 - -2.0 2,825,199 - -1.0 2,825,313 + Psest_2641 0.29 -2.7 2,825,313 + Psest_2641 0.29 -0.6 2,825,313 + Psest_2641 0.29 -1.3 2,825,313 + Psest_2641 0.29 -2.6 2,825,313 + Psest_2641 0.29 -1.1 2,825,313 + Psest_2641 0.29 +2.7 2,825,313 + Psest_2641 0.29 -0.9 2,825,313 + Psest_2641 0.29 -1.1 2,825,314 - Psest_2641 0.29 -1.4 2,825,314 - Psest_2641 0.29 -2.5 2,825,314 - Psest_2641 0.29 +0.1 2,825,314 - Psest_2641 0.29 -0.6 2,825,314 - Psest_2641 0.29 -2.0 2,825,314 - Psest_2641 0.29 -2.6 2,825,314 - Psest_2641 0.29 -0.4 2,825,314 - Psest_2641 0.29 -2.4 2,825,314 - Psest_2641 0.29 -0.1 2,825,314 - Psest_2641 0.29 -1.8 2,825,314 - Psest_2641 0.29 -1.3 2,825,314 - Psest_2641 0.29 -1.9 2,825,355 + Psest_2641 0.37 -0.0
Or see this region's nucleotide sequence