Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2633 and Psest_2634 are separated by 14 nucleotides Psest_2634 and Psest_2635 are separated by 93 nucleotides
Psest_2633: Psest_2633 - choline dehydrogenase, at 2,814,099 to 2,815,772
_2633
Psest_2634: Psest_2634 - glycine betaine aldehyde dehydrogenase, at 2,815,787 to 2,817,259
_2634
Psest_2635: Psest_2635 - choline/carnitine/betaine transport, at 2,817,353 to 2,819,419
_2635
Position (kb)
2815
2816
2817
2818 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2814.860 kb on - strand, within Psest_2633 at 2814.868 kb on + strand, within Psest_2633 at 2814.868 kb on + strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2814.869 kb on - strand, within Psest_2633 at 2815.039 kb on + strand, within Psest_2633 at 2815.462 kb on + strand, within Psest_2633 at 2815.486 kb on + strand, within Psest_2633 at 2815.486 kb on + strand, within Psest_2633 at 2815.486 kb on + strand, within Psest_2633 at 2815.487 kb on - strand, within Psest_2633 at 2815.487 kb on - strand, within Psest_2633 at 2815.493 kb on + strand, within Psest_2633 at 2815.493 kb on + strand, within Psest_2633 at 2815.494 kb on - strand, within Psest_2633 at 2815.582 kb on + strand, within Psest_2633 at 2815.582 kb on + strand, within Psest_2633 at 2815.582 kb on + strand, within Psest_2633 at 2815.583 kb on - strand, within Psest_2633 at 2815.583 kb on - strand, within Psest_2633 at 2815.583 kb on - strand, within Psest_2633 at 2815.583 kb on - strand, within Psest_2633 at 2815.583 kb on - strand, within Psest_2633 at 2815.583 kb on - strand, within Psest_2633 at 2815.595 kb on - strand, within Psest_2633 at 2815.759 kb on + strand at 2815.759 kb on + strand at 2815.760 kb on - strand at 2815.760 kb on - strand at 2815.760 kb on - strand at 2815.760 kb on - strand at 2815.765 kb on + strand at 2815.765 kb on + strand at 2815.843 kb on - strand at 2815.843 kb on - strand at 2815.894 kb on - strand at 2815.933 kb on + strand at 2815.934 kb on - strand at 2815.934 kb on - strand at 2815.934 kb on - strand at 2816.241 kb on + strand, within Psest_2634 at 2816.241 kb on + strand, within Psest_2634 at 2816.241 kb on + strand, within Psest_2634 at 2816.242 kb on - strand, within Psest_2634 at 2816.242 kb on - strand, within Psest_2634 at 2816.242 kb on - strand, within Psest_2634 at 2816.242 kb on - strand, within Psest_2634 at 2816.549 kb on + strand, within Psest_2634 at 2816.549 kb on + strand, within Psest_2634 at 2816.549 kb on + strand, within Psest_2634 at 2816.786 kb on + strand, within Psest_2634 at 2816.850 kb on + strand, within Psest_2634 at 2816.916 kb on + strand, within Psest_2634 at 2816.916 kb on + strand, within Psest_2634 at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.231 kb on + strand at 2817.232 kb on - strand at 2817.232 kb on - strand at 2817.232 kb on - strand at 2817.232 kb on - strand at 2817.232 kb on - strand at 2817.264 kb on + strand at 2817.275 kb on + strand at 2817.275 kb on + strand at 2817.276 kb on - strand at 2817.484 kb on - strand at 2817.537 kb on + strand at 2817.540 kb on + strand at 2817.610 kb on - strand, within Psest_2635 at 2817.855 kb on + strand, within Psest_2635 at 2817.877 kb on - strand, within Psest_2635 at 2817.925 kb on - strand, within Psest_2635 at 2817.925 kb on - strand, within Psest_2635 at 2817.925 kb on - strand, within Psest_2635 at 2817.968 kb on + strand, within Psest_2635 at 2817.968 kb on + strand, within Psest_2635 at 2817.968 kb on + strand, within Psest_2635 at 2817.968 kb on + strand, within Psest_2635 at 2817.969 kb on - strand, within Psest_2635 at 2817.969 kb on - strand, within Psest_2635 at 2817.969 kb on - strand, within Psest_2635 at 2817.969 kb on - strand, within Psest_2635 at 2817.969 kb on - strand, within Psest_2635 at 2818.211 kb on + strand, within Psest_2635 at 2818.211 kb on + strand, within Psest_2635 at 2818.211 kb on + strand, within Psest_2635 at 2818.211 kb on + strand, within Psest_2635 at 2818.212 kb on - strand, within Psest_2635 at 2818.212 kb on - strand, within Psest_2635 at 2818.212 kb on - strand, within Psest_2635 at 2818.215 kb on + strand, within Psest_2635 at 2818.215 kb on + strand, within Psest_2635 at 2818.215 kb on + strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635 at 2818.216 kb on - strand, within Psest_2635
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,814,860 - Psest_2633 0.45 -0.8 2,814,868 + Psest_2633 0.46 +1.2 2,814,868 + Psest_2633 0.46 -0.3 2,814,869 - Psest_2633 0.46 -1.2 2,814,869 - Psest_2633 0.46 -0.7 2,814,869 - Psest_2633 0.46 -0.3 2,814,869 - Psest_2633 0.46 -0.4 2,814,869 - Psest_2633 0.46 -0.8 2,814,869 - Psest_2633 0.46 -0.2 2,814,869 - Psest_2633 0.46 -0.2 2,814,869 - Psest_2633 0.46 -0.9 2,815,039 + Psest_2633 0.56 -1.1 2,815,462 + Psest_2633 0.81 +0.0 2,815,486 + Psest_2633 0.83 -1.0 2,815,486 + Psest_2633 0.83 -1.0 2,815,486 + Psest_2633 0.83 -0.4 2,815,487 - Psest_2633 0.83 -1.0 2,815,487 - Psest_2633 0.83 -1.8 2,815,493 + Psest_2633 0.83 -0.4 2,815,493 + Psest_2633 0.83 -0.9 2,815,494 - Psest_2633 0.83 +3.2 2,815,582 + Psest_2633 0.89 +0.2 2,815,582 + Psest_2633 0.89 +1.4 2,815,582 + Psest_2633 0.89 +2.5 2,815,583 - Psest_2633 0.89 -1.4 2,815,583 - Psest_2633 0.89 -0.4 2,815,583 - Psest_2633 0.89 -0.4 2,815,583 - Psest_2633 0.89 +0.8 2,815,583 - Psest_2633 0.89 +1.0 2,815,583 - Psest_2633 0.89 -1.2 2,815,595 - Psest_2633 0.89 -0.2 2,815,759 + -1.1 2,815,759 + -1.4 2,815,760 - +0.7 2,815,760 - +1.2 2,815,760 - -2.0 2,815,760 - -0.4 2,815,765 + -1.8 2,815,765 + +1.7 2,815,843 - -1.4 2,815,843 - -0.8 2,815,894 - -1.4 2,815,933 + -0.4 2,815,934 - +2.2 2,815,934 - +0.2 2,815,934 - -0.2 2,816,241 + Psest_2634 0.31 +0.3 2,816,241 + Psest_2634 0.31 +0.7 2,816,241 + Psest_2634 0.31 -1.8 2,816,242 - Psest_2634 0.31 +0.7 2,816,242 - Psest_2634 0.31 -2.0 2,816,242 - Psest_2634 0.31 -1.0 2,816,242 - Psest_2634 0.31 -1.2 2,816,549 + Psest_2634 0.52 +0.8 2,816,549 + Psest_2634 0.52 +0.3 2,816,549 + Psest_2634 0.52 +1.7 2,816,786 + Psest_2634 0.68 +0.3 2,816,850 + Psest_2634 0.72 +1.2 2,816,916 + Psest_2634 0.77 +0.2 2,816,916 + Psest_2634 0.77 +0.3 2,817,231 + -0.2 2,817,231 + -1.2 2,817,231 + +0.4 2,817,231 + -0.7 2,817,231 + +0.6 2,817,231 + +0.4 2,817,231 + -0.8 2,817,231 + +0.7 2,817,232 - -0.0 2,817,232 - +1.2 2,817,232 - -0.8 2,817,232 - +0.2 2,817,232 - -0.4 2,817,264 + +1.7 2,817,275 + +1.7 2,817,275 + -0.1 2,817,276 - +0.8 2,817,484 - +1.2 2,817,537 + -1.7 2,817,540 + +0.5 2,817,610 - Psest_2635 0.12 -0.4 2,817,855 + Psest_2635 0.24 -0.8 2,817,877 - Psest_2635 0.25 -2.3 2,817,925 - Psest_2635 0.28 +0.3 2,817,925 - Psest_2635 0.28 +0.2 2,817,925 - Psest_2635 0.28 -0.3 2,817,968 + Psest_2635 0.30 -1.2 2,817,968 + Psest_2635 0.30 -0.7 2,817,968 + Psest_2635 0.30 +2.0 2,817,968 + Psest_2635 0.30 +0.3 2,817,969 - Psest_2635 0.30 -0.4 2,817,969 - Psest_2635 0.30 -0.3 2,817,969 - Psest_2635 0.30 -2.2 2,817,969 - Psest_2635 0.30 -0.4 2,817,969 - Psest_2635 0.30 -1.2 2,818,211 + Psest_2635 0.42 -1.0 2,818,211 + Psest_2635 0.42 -1.7 2,818,211 + Psest_2635 0.42 -0.4 2,818,211 + Psest_2635 0.42 +1.2 2,818,212 - Psest_2635 0.42 -0.2 2,818,212 - Psest_2635 0.42 -1.4 2,818,212 - Psest_2635 0.42 +0.2 2,818,215 + Psest_2635 0.42 -1.4 2,818,215 + Psest_2635 0.42 +0.0 2,818,215 + Psest_2635 0.42 -1.8 2,818,216 - Psest_2635 0.42 -0.6 2,818,216 - Psest_2635 0.42 -0.9 2,818,216 - Psest_2635 0.42 -1.2 2,818,216 - Psest_2635 0.42 +0.6 2,818,216 - Psest_2635 0.42 +0.6 2,818,216 - Psest_2635 0.42 +0.6 2,818,216 - Psest_2635 0.42 +0.6 2,818,216 - Psest_2635 0.42 -0.3
Or see this region's nucleotide sequence