Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2548 and Psest_2549 are separated by 121 nucleotides Psest_2549 and Psest_2550 are separated by 21 nucleotides
Psest_2548: Psest_2548 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,727,702 to 2,728,847
_2548
Psest_2549: Psest_2549 - putative efflux protein, MATE family, at 2,728,969 to 2,730,363
_2549
Psest_2550: Psest_2550 - Rhodanese-like domain./Cyclic nucleotide-binding domain., at 2,730,385 to 2,731,485
_2550
Position (kb)
2728
2729
2730
2731 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2728.878 kb on + strand at 2728.878 kb on + strand at 2728.879 kb on - strand at 2728.928 kb on + strand at 2728.947 kb on + strand at 2728.948 kb on - strand at 2728.949 kb on + strand at 2728.949 kb on + strand at 2728.949 kb on + strand at 2728.949 kb on + strand at 2728.950 kb on - strand at 2729.158 kb on + strand, within Psest_2549 at 2729.158 kb on + strand, within Psest_2549 at 2729.159 kb on - strand, within Psest_2549 at 2729.372 kb on - strand, within Psest_2549 at 2729.372 kb on - strand, within Psest_2549 at 2729.372 kb on - strand, within Psest_2549 at 2729.468 kb on + strand, within Psest_2549 at 2729.468 kb on + strand, within Psest_2549 at 2729.469 kb on - strand, within Psest_2549 at 2729.509 kb on + strand, within Psest_2549 at 2729.510 kb on - strand, within Psest_2549 at 2729.510 kb on - strand, within Psest_2549 at 2729.510 kb on - strand, within Psest_2549 at 2729.510 kb on - strand, within Psest_2549 at 2729.510 kb on - strand, within Psest_2549 at 2729.510 kb on - strand, within Psest_2549 at 2729.521 kb on + strand, within Psest_2549 at 2729.521 kb on + strand, within Psest_2549 at 2729.522 kb on - strand, within Psest_2549 at 2729.522 kb on - strand, within Psest_2549 at 2729.522 kb on - strand, within Psest_2549 at 2729.522 kb on - strand, within Psest_2549 at 2729.522 kb on - strand, within Psest_2549 at 2729.823 kb on + strand, within Psest_2549 at 2729.824 kb on - strand, within Psest_2549 at 2729.873 kb on + strand, within Psest_2549 at 2729.957 kb on - strand, within Psest_2549 at 2730.013 kb on + strand, within Psest_2549 at 2730.013 kb on + strand, within Psest_2549 at 2730.013 kb on + strand, within Psest_2549 at 2730.013 kb on + strand, within Psest_2549 at 2730.013 kb on + strand, within Psest_2549 at 2730.014 kb on - strand, within Psest_2549 at 2730.014 kb on - strand, within Psest_2549 at 2730.014 kb on - strand, within Psest_2549 at 2730.014 kb on - strand, within Psest_2549 at 2730.014 kb on - strand, within Psest_2549 at 2730.015 kb on + strand, within Psest_2549 at 2730.016 kb on - strand, within Psest_2549 at 2730.016 kb on - strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.061 kb on + strand, within Psest_2549 at 2730.062 kb on - strand, within Psest_2549 at 2730.062 kb on - strand, within Psest_2549 at 2730.062 kb on - strand, within Psest_2549 at 2730.062 kb on - strand, within Psest_2549 at 2730.062 kb on - strand, within Psest_2549 at 2730.151 kb on + strand, within Psest_2549 at 2730.151 kb on + strand, within Psest_2549 at 2730.151 kb on + strand, within Psest_2549 at 2730.362 kb on - strand at 2730.362 kb on - strand at 2730.362 kb on - strand at 2730.376 kb on + strand at 2730.376 kb on + strand at 2730.376 kb on + strand at 2730.376 kb on + strand at 2730.376 kb on + strand at 2730.376 kb on + strand at 2730.377 kb on - strand at 2730.377 kb on - strand at 2730.377 kb on - strand at 2730.387 kb on - strand at 2730.387 kb on - strand at 2730.501 kb on - strand, within Psest_2550 at 2730.532 kb on + strand, within Psest_2550 at 2730.567 kb on - strand, within Psest_2550 at 2730.614 kb on - strand, within Psest_2550 at 2730.950 kb on + strand, within Psest_2550 at 2730.951 kb on - strand, within Psest_2550 at 2730.951 kb on - strand, within Psest_2550 at 2730.951 kb on - strand, within Psest_2550 at 2730.951 kb on - strand, within Psest_2550 at 2730.951 kb on - strand, within Psest_2550 at 2730.951 kb on - strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.036 kb on + strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.037 kb on - strand, within Psest_2550 at 2731.243 kb on - strand, within Psest_2550 at 2731.329 kb on - strand, within Psest_2550 at 2731.329 kb on - strand, within Psest_2550
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,728,878 + +0.3 2,728,878 + -1.4 2,728,879 - +1.4 2,728,928 + +0.4 2,728,947 + +2.6 2,728,948 - +0.6 2,728,949 + -0.2 2,728,949 + +0.1 2,728,949 + -0.0 2,728,949 + -2.1 2,728,950 - -0.7 2,729,158 + Psest_2549 0.14 +0.1 2,729,158 + Psest_2549 0.14 -0.0 2,729,159 - Psest_2549 0.14 -0.7 2,729,372 - Psest_2549 0.29 +0.8 2,729,372 - Psest_2549 0.29 -2.1 2,729,372 - Psest_2549 0.29 +0.8 2,729,468 + Psest_2549 0.36 +0.1 2,729,468 + Psest_2549 0.36 +0.0 2,729,469 - Psest_2549 0.36 +0.3 2,729,509 + Psest_2549 0.39 -2.6 2,729,510 - Psest_2549 0.39 -2.1 2,729,510 - Psest_2549 0.39 +0.9 2,729,510 - Psest_2549 0.39 +0.7 2,729,510 - Psest_2549 0.39 -0.2 2,729,510 - Psest_2549 0.39 -0.8 2,729,510 - Psest_2549 0.39 +0.4 2,729,521 + Psest_2549 0.40 -3.3 2,729,521 + Psest_2549 0.40 -1.3 2,729,522 - Psest_2549 0.40 -1.6 2,729,522 - Psest_2549 0.40 +0.3 2,729,522 - Psest_2549 0.40 +0.7 2,729,522 - Psest_2549 0.40 -0.7 2,729,522 - Psest_2549 0.40 +0.3 2,729,823 + Psest_2549 0.61 -0.8 2,729,824 - Psest_2549 0.61 -2.3 2,729,873 + Psest_2549 0.65 +0.2 2,729,957 - Psest_2549 0.71 -0.2 2,730,013 + Psest_2549 0.75 -1.3 2,730,013 + Psest_2549 0.75 +2.1 2,730,013 + Psest_2549 0.75 +1.0 2,730,013 + Psest_2549 0.75 -0.3 2,730,013 + Psest_2549 0.75 +0.8 2,730,014 - Psest_2549 0.75 +0.3 2,730,014 - Psest_2549 0.75 -0.8 2,730,014 - Psest_2549 0.75 +0.3 2,730,014 - Psest_2549 0.75 -1.2 2,730,014 - Psest_2549 0.75 -1.0 2,730,015 + Psest_2549 0.75 -1.3 2,730,016 - Psest_2549 0.75 -0.0 2,730,016 - Psest_2549 0.75 +0.7 2,730,061 + Psest_2549 0.78 +0.4 2,730,061 + Psest_2549 0.78 +3.4 2,730,061 + Psest_2549 0.78 -1.0 2,730,061 + Psest_2549 0.78 +1.3 2,730,061 + Psest_2549 0.78 -1.1 2,730,061 + Psest_2549 0.78 +1.3 2,730,061 + Psest_2549 0.78 +0.5 2,730,062 - Psest_2549 0.78 -2.2 2,730,062 - Psest_2549 0.78 -1.9 2,730,062 - Psest_2549 0.78 -2.2 2,730,062 - Psest_2549 0.78 -0.5 2,730,062 - Psest_2549 0.78 +0.5 2,730,151 + Psest_2549 0.85 +0.3 2,730,151 + Psest_2549 0.85 -0.2 2,730,151 + Psest_2549 0.85 -1.1 2,730,362 - -1.3 2,730,362 - -1.9 2,730,362 - -0.5 2,730,376 + -0.7 2,730,376 + -0.4 2,730,376 + +0.8 2,730,376 + +1.6 2,730,376 + -0.9 2,730,376 + +0.4 2,730,377 - +0.7 2,730,377 - -0.6 2,730,377 - +0.8 2,730,387 - -0.8 2,730,387 - -0.7 2,730,501 - Psest_2550 0.11 -0.9 2,730,532 + Psest_2550 0.13 -3.2 2,730,567 - Psest_2550 0.17 -0.8 2,730,614 - Psest_2550 0.21 -0.7 2,730,950 + Psest_2550 0.51 +0.3 2,730,951 - Psest_2550 0.51 +1.3 2,730,951 - Psest_2550 0.51 -0.5 2,730,951 - Psest_2550 0.51 +0.5 2,730,951 - Psest_2550 0.51 +1.4 2,730,951 - Psest_2550 0.51 +2.3 2,730,951 - Psest_2550 0.51 -0.1 2,731,036 + Psest_2550 0.59 +1.3 2,731,036 + Psest_2550 0.59 +1.6 2,731,036 + Psest_2550 0.59 -1.1 2,731,036 + Psest_2550 0.59 +0.9 2,731,036 + Psest_2550 0.59 -2.7 2,731,036 + Psest_2550 0.59 -0.9 2,731,036 + Psest_2550 0.59 -0.3 2,731,036 + Psest_2550 0.59 +1.3 2,731,036 + Psest_2550 0.59 -0.7 2,731,037 - Psest_2550 0.59 -0.7 2,731,037 - Psest_2550 0.59 +0.2 2,731,037 - Psest_2550 0.59 +0.3 2,731,037 - Psest_2550 0.59 -0.7 2,731,037 - Psest_2550 0.59 +0.4 2,731,037 - Psest_2550 0.59 +0.6 2,731,037 - Psest_2550 0.59 -0.4 2,731,037 - Psest_2550 0.59 -0.0 2,731,037 - Psest_2550 0.59 +0.9 2,731,037 - Psest_2550 0.59 +0.4 2,731,037 - Psest_2550 0.59 +0.3 2,731,037 - Psest_2550 0.59 +0.2 2,731,037 - Psest_2550 0.59 +0.3 2,731,037 - Psest_2550 0.59 +0.4 2,731,243 - Psest_2550 0.78 +0.6 2,731,329 - Psest_2550 0.86 +0.5 2,731,329 - Psest_2550 0.86 -0.9
Or see this region's nucleotide sequence