Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0024 and Psest_0025 are separated by 87 nucleotides Psest_0025 and Psest_0026 are separated by 155 nucleotides Psest_0026 and Psest_0027 are separated by 52 nucleotides
Psest_0024: Psest_0024 - LysM domain., at 24,677 to 25,702
_0024
Psest_0025: Psest_0025 - DNA protecting protein DprA, at 25,790 to 26,887
_0025
Psest_0026: Psest_0026 - Putative translation factor (SUA5), at 27,043 to 27,600
_0026
Psest_0027: Psest_0027 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 27,653 to 28,630
_0027
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.884 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.936 kb on + strand, within Psest_0024 at 24.937 kb on - strand, within Psest_0024 at 24.988 kb on + strand, within Psest_0024 at 24.988 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.098 kb on - strand, within Psest_0024 at 25.098 kb on - strand, within Psest_0024 at 25.151 kb on + strand, within Psest_0024 at 25.151 kb on + strand, within Psest_0024 at 25.152 kb on - strand, within Psest_0024 at 25.152 kb on - strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.532 kb on + strand, within Psest_0024 at 25.532 kb on + strand, within Psest_0024 at 25.533 kb on - strand, within Psest_0024 at 25.625 kb on + strand at 25.625 kb on + strand at 25.625 kb on + strand at 25.625 kb on + strand at 25.640 kb on + strand at 25.640 kb on + strand at 25.641 kb on - strand at 25.766 kb on + strand at 25.766 kb on + strand at 25.767 kb on - strand at 25.767 kb on - strand at 25.781 kb on + strand at 26.060 kb on + strand, within Psest_0025 at 26.434 kb on + strand, within Psest_0025 at 26.435 kb on - strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.886 kb on - strand at 26.886 kb on - strand at 26.971 kb on + strand at 26.971 kb on + strand at 26.972 kb on - strand at 26.972 kb on - strand at 27.825 kb on + strand, within Psest_0027
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 24,884 + Psest_0024 0.20 -0.1 24,911 + Psest_0024 0.23 -1.7 24,911 + Psest_0024 0.23 -0.1 24,911 + Psest_0024 0.23 -1.4 24,911 + Psest_0024 0.23 -1.7 24,911 + Psest_0024 0.23 -0.3 24,911 + Psest_0024 0.23 +0.9 24,911 + Psest_0024 0.23 -1.9 24,911 + Psest_0024 0.23 +0.2 24,911 + Psest_0024 0.23 -2.6 24,911 + Psest_0024 0.23 -1.1 24,911 + Psest_0024 0.23 -1.1 24,912 - Psest_0024 0.23 -0.1 24,912 - Psest_0024 0.23 -0.1 24,912 - Psest_0024 0.23 -1.9 24,912 - Psest_0024 0.23 -1.4 24,912 - Psest_0024 0.23 -0.9 24,912 - Psest_0024 0.23 -1.8 24,912 - Psest_0024 0.23 -1.9 24,912 - Psest_0024 0.23 -2.3 24,912 - Psest_0024 0.23 -1.7 24,912 - Psest_0024 0.23 -0.1 24,912 - Psest_0024 0.23 -2.1 24,912 - Psest_0024 0.23 -2.9 24,936 + Psest_0024 0.25 -0.5 24,937 - Psest_0024 0.25 -1.1 24,988 + Psest_0024 0.30 -0.7 24,988 + Psest_0024 0.30 -1.5 25,097 + Psest_0024 0.41 -0.5 25,097 + Psest_0024 0.41 -1.0 25,097 + Psest_0024 0.41 -0.7 25,097 + Psest_0024 0.41 -1.6 25,097 + Psest_0024 0.41 -0.6 25,098 - Psest_0024 0.41 -0.7 25,098 - Psest_0024 0.41 +0.9 25,151 + Psest_0024 0.46 -1.9 25,151 + Psest_0024 0.46 -1.4 25,152 - Psest_0024 0.46 -0.7 25,152 - Psest_0024 0.46 -0.8 25,214 + Psest_0024 0.52 -0.7 25,214 + Psest_0024 0.52 -0.4 25,214 + Psest_0024 0.52 -1.9 25,214 + Psest_0024 0.52 -0.4 25,215 - Psest_0024 0.52 -0.1 25,215 - Psest_0024 0.52 -1.3 25,215 - Psest_0024 0.52 -1.4 25,215 - Psest_0024 0.52 -2.6 25,215 - Psest_0024 0.52 -2.4 25,215 - Psest_0024 0.52 -1.1 25,215 - Psest_0024 0.52 -2.7 25,532 + Psest_0024 0.83 -1.7 25,532 + Psest_0024 0.83 -0.5 25,533 - Psest_0024 0.83 +0.9 25,625 + -1.6 25,625 + +0.1 25,625 + -0.9 25,625 + -1.1 25,640 + +1.3 25,640 + +1.1 25,641 - -0.1 25,766 + -0.1 25,766 + +0.5 25,767 - -0.4 25,767 - +1.8 25,781 + +0.2 26,060 + Psest_0025 0.25 -0.3 26,434 + Psest_0025 0.59 +0.2 26,435 - Psest_0025 0.59 +0.4 26,558 + Psest_0025 0.70 -0.7 26,558 + Psest_0025 0.70 +0.2 26,558 + Psest_0025 0.70 +0.3 26,558 + Psest_0025 0.70 +0.2 26,558 + Psest_0025 0.70 +1.1 26,558 + Psest_0025 0.70 +0.1 26,558 + Psest_0025 0.70 +0.6 26,559 - Psest_0025 0.70 +0.0 26,559 - Psest_0025 0.70 +1.3 26,559 - Psest_0025 0.70 +0.5 26,559 - Psest_0025 0.70 +1.0 26,559 - Psest_0025 0.70 +0.9 26,886 - +0.7 26,886 - -0.0 26,971 + +1.5 26,971 + +0.4 26,972 - -0.4 26,972 - +0.9 27,825 + Psest_0027 0.18 -1.1
Or see this region's nucleotide sequence