Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2505 and Psest_2506 are separated by 67 nucleotides Psest_2506 and Psest_2507 are separated by 74 nucleotides Psest_2507 and Psest_2508 are separated by 401 nucleotides
Psest_2505: Psest_2505 - Flagellar capping protein, at 2,678,571 to 2,679,992
_2505
Psest_2506: Psest_2506 - Uncharacterized flagellar protein FlaG, at 2,680,060 to 2,680,419
_2506
Psest_2507: Psest_2507 - Flagellin and related hook-associated proteins, at 2,680,494 to 2,681,678
_2507
Psest_2508: Psest_2508 - DNA ligase, NAD-dependent, at 2,682,080 to 2,684,455
_2508
Position (kb)
2680
2681
2682 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2679.625 kb on - strand, within Psest_2505 at 2679.654 kb on - strand, within Psest_2505 at 2679.670 kb on - strand, within Psest_2505 at 2679.670 kb on - strand, within Psest_2505 at 2679.707 kb on + strand, within Psest_2505 at 2679.708 kb on - strand, within Psest_2505 at 2679.709 kb on + strand, within Psest_2505 at 2679.709 kb on + strand, within Psest_2505 at 2679.710 kb on - strand, within Psest_2505 at 2679.710 kb on - strand, within Psest_2505 at 2679.710 kb on - strand, within Psest_2505 at 2679.710 kb on - strand, within Psest_2505 at 2679.801 kb on - strand, within Psest_2505 at 2680.020 kb on - strand at 2680.270 kb on + strand, within Psest_2506 at 2680.270 kb on + strand, within Psest_2506 at 2680.270 kb on + strand, within Psest_2506 at 2680.270 kb on + strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.271 kb on - strand, within Psest_2506 at 2680.372 kb on + strand, within Psest_2506 at 2680.372 kb on + strand, within Psest_2506 at 2680.396 kb on + strand at 2680.450 kb on + strand at 2680.451 kb on - strand at 2680.496 kb on - strand at 2680.695 kb on + strand, within Psest_2507 at 2680.696 kb on - strand, within Psest_2507 at 2680.727 kb on + strand, within Psest_2507 at 2680.727 kb on + strand, within Psest_2507 at 2680.727 kb on + strand, within Psest_2507 at 2680.728 kb on - strand, within Psest_2507 at 2680.728 kb on - strand, within Psest_2507 at 2680.801 kb on - strand, within Psest_2507 at 2680.801 kb on - strand, within Psest_2507 at 2680.801 kb on - strand, within Psest_2507 at 2680.801 kb on - strand, within Psest_2507 at 2680.847 kb on + strand, within Psest_2507 at 2680.848 kb on - strand, within Psest_2507 at 2680.848 kb on - strand, within Psest_2507 at 2680.851 kb on + strand, within Psest_2507 at 2680.851 kb on + strand, within Psest_2507 at 2680.851 kb on + strand, within Psest_2507 at 2680.852 kb on - strand, within Psest_2507 at 2680.852 kb on - strand, within Psest_2507 at 2680.896 kb on + strand, within Psest_2507 at 2680.897 kb on - strand, within Psest_2507 at 2680.941 kb on + strand, within Psest_2507 at 2680.942 kb on - strand, within Psest_2507 at 2680.943 kb on + strand, within Psest_2507 at 2680.943 kb on + strand, within Psest_2507 at 2680.943 kb on + strand, within Psest_2507 at 2680.944 kb on - strand, within Psest_2507 at 2680.944 kb on - strand, within Psest_2507 at 2680.944 kb on - strand, within Psest_2507 at 2680.944 kb on - strand, within Psest_2507 at 2680.944 kb on - strand, within Psest_2507 at 2680.944 kb on - strand, within Psest_2507 at 2681.061 kb on + strand, within Psest_2507 at 2681.062 kb on - strand, within Psest_2507 at 2681.062 kb on - strand, within Psest_2507 at 2681.062 kb on - strand, within Psest_2507 at 2681.068 kb on + strand, within Psest_2507 at 2681.069 kb on - strand, within Psest_2507 at 2681.069 kb on - strand, within Psest_2507 at 2681.114 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.150 kb on + strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.151 kb on - strand, within Psest_2507 at 2681.233 kb on - strand, within Psest_2507 at 2681.233 kb on - strand, within Psest_2507 at 2681.233 kb on - strand, within Psest_2507 at 2681.388 kb on + strand, within Psest_2507 at 2681.388 kb on + strand, within Psest_2507 at 2681.405 kb on + strand, within Psest_2507 at 2681.405 kb on + strand, within Psest_2507 at 2681.406 kb on - strand, within Psest_2507 at 2681.465 kb on + strand, within Psest_2507 at 2681.669 kb on + strand at 2681.669 kb on + strand at 2681.701 kb on - strand at 2681.705 kb on - strand at 2681.705 kb on - strand at 2681.742 kb on - strand at 2681.848 kb on + strand at 2681.864 kb on + strand at 2681.864 kb on + strand at 2681.913 kb on - strand at 2682.081 kb on + strand at 2682.081 kb on + strand at 2682.081 kb on + strand at 2682.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,679,625 - Psest_2505 0.74 -1.2 2,679,654 - Psest_2505 0.76 -0.3 2,679,670 - Psest_2505 0.77 -0.4 2,679,670 - Psest_2505 0.77 -1.6 2,679,707 + Psest_2505 0.80 -2.2 2,679,708 - Psest_2505 0.80 +0.5 2,679,709 + Psest_2505 0.80 -2.2 2,679,709 + Psest_2505 0.80 -1.1 2,679,710 - Psest_2505 0.80 -1.1 2,679,710 - Psest_2505 0.80 +0.0 2,679,710 - Psest_2505 0.80 -1.3 2,679,710 - Psest_2505 0.80 -0.2 2,679,801 - Psest_2505 0.86 -2.2 2,680,020 - +0.1 2,680,270 + Psest_2506 0.58 +0.5 2,680,270 + Psest_2506 0.58 -1.1 2,680,270 + Psest_2506 0.58 -0.2 2,680,270 + Psest_2506 0.58 -0.3 2,680,271 - Psest_2506 0.59 -1.1 2,680,271 - Psest_2506 0.59 -0.3 2,680,271 - Psest_2506 0.59 +1.6 2,680,271 - Psest_2506 0.59 +0.7 2,680,271 - Psest_2506 0.59 -0.3 2,680,271 - Psest_2506 0.59 +1.3 2,680,271 - Psest_2506 0.59 +0.0 2,680,372 + Psest_2506 0.87 -0.9 2,680,372 + Psest_2506 0.87 -1.5 2,680,396 + -2.1 2,680,450 + -0.3 2,680,451 - -0.0 2,680,496 - +2.4 2,680,695 + Psest_2507 0.17 -3.2 2,680,696 - Psest_2507 0.17 -2.1 2,680,727 + Psest_2507 0.20 -1.4 2,680,727 + Psest_2507 0.20 -2.1 2,680,727 + Psest_2507 0.20 -2.1 2,680,728 - Psest_2507 0.20 -2.4 2,680,728 - Psest_2507 0.20 -0.3 2,680,801 - Psest_2507 0.26 -0.5 2,680,801 - Psest_2507 0.26 -0.5 2,680,801 - Psest_2507 0.26 -0.7 2,680,801 - Psest_2507 0.26 -1.4 2,680,847 + Psest_2507 0.30 -2.6 2,680,848 - Psest_2507 0.30 -0.6 2,680,848 - Psest_2507 0.30 -1.1 2,680,851 + Psest_2507 0.30 -1.3 2,680,851 + Psest_2507 0.30 -2.1 2,680,851 + Psest_2507 0.30 -3.7 2,680,852 - Psest_2507 0.30 -2.0 2,680,852 - Psest_2507 0.30 -1.1 2,680,896 + Psest_2507 0.34 -1.5 2,680,897 - Psest_2507 0.34 -1.4 2,680,941 + Psest_2507 0.38 -3.1 2,680,942 - Psest_2507 0.38 +0.6 2,680,943 + Psest_2507 0.38 -3.2 2,680,943 + Psest_2507 0.38 -1.8 2,680,943 + Psest_2507 0.38 -1.9 2,680,944 - Psest_2507 0.38 -1.4 2,680,944 - Psest_2507 0.38 -1.1 2,680,944 - Psest_2507 0.38 +0.7 2,680,944 - Psest_2507 0.38 -1.4 2,680,944 - Psest_2507 0.38 +0.3 2,680,944 - Psest_2507 0.38 -2.5 2,681,061 + Psest_2507 0.48 -4.8 2,681,062 - Psest_2507 0.48 -2.3 2,681,062 - Psest_2507 0.48 +0.3 2,681,062 - Psest_2507 0.48 -2.4 2,681,068 + Psest_2507 0.48 +0.7 2,681,069 - Psest_2507 0.49 -0.8 2,681,069 - Psest_2507 0.49 -0.2 2,681,114 + Psest_2507 0.52 -1.1 2,681,150 + Psest_2507 0.55 -2.4 2,681,150 + Psest_2507 0.55 -2.1 2,681,150 + Psest_2507 0.55 -0.3 2,681,150 + Psest_2507 0.55 -2.5 2,681,151 - Psest_2507 0.55 -2.1 2,681,151 - Psest_2507 0.55 -1.5 2,681,151 - Psest_2507 0.55 -1.6 2,681,151 - Psest_2507 0.55 -1.1 2,681,151 - Psest_2507 0.55 -1.5 2,681,151 - Psest_2507 0.55 -1.8 2,681,151 - Psest_2507 0.55 -1.3 2,681,151 - Psest_2507 0.55 -2.5 2,681,151 - Psest_2507 0.55 -1.3 2,681,151 - Psest_2507 0.55 -0.7 2,681,151 - Psest_2507 0.55 -0.7 2,681,151 - Psest_2507 0.55 -2.0 2,681,151 - Psest_2507 0.55 -0.9 2,681,151 - Psest_2507 0.55 -1.3 2,681,151 - Psest_2507 0.55 -0.7 2,681,151 - Psest_2507 0.55 -1.5 2,681,233 - Psest_2507 0.62 -2.7 2,681,233 - Psest_2507 0.62 -3.8 2,681,233 - Psest_2507 0.62 -1.5 2,681,388 + Psest_2507 0.75 -1.9 2,681,388 + Psest_2507 0.75 -1.1 2,681,405 + Psest_2507 0.77 -0.7 2,681,405 + Psest_2507 0.77 -1.4 2,681,406 - Psest_2507 0.77 -1.8 2,681,465 + Psest_2507 0.82 -2.9 2,681,669 + -2.1 2,681,669 + -2.2 2,681,701 - -1.4 2,681,705 - -0.3 2,681,705 - +3.4 2,681,742 - -3.1 2,681,848 + -0.2 2,681,864 + +0.9 2,681,864 + -0.4 2,681,913 - -2.8 2,682,081 + -2.8 2,682,081 + +1.3 2,682,081 + -4.7 2,682,082 - -1.4
Or see this region's nucleotide sequence