Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2479 and Psest_2480 are separated by 131 nucleotides Psest_2480 and Psest_2481 are separated by 154 nucleotides Psest_2481 and Psest_2482 are separated by 63 nucleotides
Psest_2479: Psest_2479 - Methyl-accepting chemotaxis protein, at 2,650,551 to 2,652,170
_2479
Psest_2480: Psest_2480 - Methyl-accepting chemotaxis protein, at 2,652,302 to 2,653,921
_2480
Psest_2481: Psest_2481 - hypothetical protein, at 2,654,076 to 2,654,540
_2481
Psest_2482: Psest_2482 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,654,604 to 2,655,629
_2482
Position (kb)
2652
2653
2654 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2651.655 kb on - strand, within Psest_2479 at 2651.687 kb on - strand, within Psest_2479 at 2651.687 kb on - strand, within Psest_2479 at 2651.703 kb on - strand, within Psest_2479 at 2651.705 kb on + strand, within Psest_2479 at 2651.706 kb on - strand, within Psest_2479 at 2651.706 kb on - strand, within Psest_2479 at 2651.778 kb on + strand, within Psest_2479 at 2651.778 kb on + strand, within Psest_2479 at 2651.779 kb on - strand, within Psest_2479 at 2651.803 kb on + strand, within Psest_2479 at 2651.844 kb on - strand, within Psest_2479 at 2651.859 kb on + strand, within Psest_2479 at 2651.860 kb on - strand, within Psest_2479 at 2652.164 kb on + strand at 2652.164 kb on + strand at 2652.165 kb on - strand at 2652.199 kb on + strand at 2652.206 kb on - strand at 2652.227 kb on + strand at 2652.228 kb on - strand at 2652.228 kb on - strand at 2652.248 kb on + strand at 2652.293 kb on - strand at 2652.293 kb on - strand at 2652.568 kb on + strand, within Psest_2480 at 2652.569 kb on - strand, within Psest_2480 at 2652.569 kb on - strand, within Psest_2480 at 2652.569 kb on - strand, within Psest_2480 at 2653.288 kb on + strand, within Psest_2480 at 2653.576 kb on - strand, within Psest_2480 at 2653.576 kb on - strand, within Psest_2480 at 2653.624 kb on - strand, within Psest_2480 at 2653.986 kb on - strand at 2654.023 kb on + strand at 2654.024 kb on - strand at 2654.218 kb on - strand, within Psest_2481 at 2654.218 kb on - strand, within Psest_2481 at 2654.218 kb on - strand, within Psest_2481 at 2654.276 kb on - strand, within Psest_2481 at 2654.276 kb on - strand, within Psest_2481 at 2654.276 kb on - strand, within Psest_2481 at 2654.276 kb on - strand, within Psest_2481 at 2654.424 kb on + strand, within Psest_2481 at 2654.424 kb on + strand, within Psest_2481 at 2654.424 kb on + strand, within Psest_2481 at 2654.424 kb on + strand, within Psest_2481 at 2654.472 kb on + strand, within Psest_2481 at 2654.485 kb on - strand, within Psest_2481 at 2654.485 kb on - strand, within Psest_2481 at 2654.487 kb on + strand, within Psest_2481 at 2654.529 kb on + strand at 2654.529 kb on + strand at 2654.530 kb on - strand at 2654.530 kb on - strand at 2654.574 kb on + strand at 2654.574 kb on + strand at 2654.575 kb on - strand at 2654.717 kb on + strand, within Psest_2482 at 2654.836 kb on + strand, within Psest_2482 at 2654.836 kb on + strand, within Psest_2482 at 2654.837 kb on - strand, within Psest_2482 at 2654.869 kb on + strand, within Psest_2482 at 2654.869 kb on + strand, within Psest_2482 at 2654.869 kb on + strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482 at 2654.870 kb on - strand, within Psest_2482
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,651,655 - Psest_2479 0.68 -1.6 2,651,687 - Psest_2479 0.70 -2.5 2,651,687 - Psest_2479 0.70 -0.2 2,651,703 - Psest_2479 0.71 +0.2 2,651,705 + Psest_2479 0.71 +0.2 2,651,706 - Psest_2479 0.71 +0.0 2,651,706 - Psest_2479 0.71 -1.2 2,651,778 + Psest_2479 0.76 -1.2 2,651,778 + Psest_2479 0.76 -1.0 2,651,779 - Psest_2479 0.76 -0.5 2,651,803 + Psest_2479 0.77 +0.9 2,651,844 - Psest_2479 0.80 -0.3 2,651,859 + Psest_2479 0.81 -1.8 2,651,860 - Psest_2479 0.81 -1.8 2,652,164 + -0.6 2,652,164 + +0.1 2,652,165 - -0.8 2,652,199 + +0.1 2,652,206 - +1.1 2,652,227 + +0.2 2,652,228 - +0.8 2,652,228 - +0.2 2,652,248 + -0.1 2,652,293 - +1.2 2,652,293 - +0.2 2,652,568 + Psest_2480 0.16 -1.8 2,652,569 - Psest_2480 0.16 +1.9 2,652,569 - Psest_2480 0.16 +0.7 2,652,569 - Psest_2480 0.16 -0.3 2,653,288 + Psest_2480 0.61 -2.6 2,653,576 - Psest_2480 0.79 +1.7 2,653,576 - Psest_2480 0.79 -3.3 2,653,624 - Psest_2480 0.82 +0.5 2,653,986 - -1.0 2,654,023 + -0.2 2,654,024 - -0.2 2,654,218 - Psest_2481 0.31 +0.6 2,654,218 - Psest_2481 0.31 -1.8 2,654,218 - Psest_2481 0.31 +2.5 2,654,276 - Psest_2481 0.43 -0.6 2,654,276 - Psest_2481 0.43 -0.5 2,654,276 - Psest_2481 0.43 -1.1 2,654,276 - Psest_2481 0.43 -0.5 2,654,424 + Psest_2481 0.75 +0.0 2,654,424 + Psest_2481 0.75 -1.2 2,654,424 + Psest_2481 0.75 +1.6 2,654,424 + Psest_2481 0.75 -1.2 2,654,472 + Psest_2481 0.85 -0.8 2,654,485 - Psest_2481 0.88 -0.5 2,654,485 - Psest_2481 0.88 -1.0 2,654,487 + Psest_2481 0.88 +1.9 2,654,529 + -0.6 2,654,529 + -0.7 2,654,530 - +1.0 2,654,530 - +0.1 2,654,574 + -0.6 2,654,574 + -1.0 2,654,575 - +0.4 2,654,717 + Psest_2482 0.11 -0.1 2,654,836 + Psest_2482 0.23 +0.6 2,654,836 + Psest_2482 0.23 +0.7 2,654,837 - Psest_2482 0.23 -1.2 2,654,869 + Psest_2482 0.26 -0.5 2,654,869 + Psest_2482 0.26 +0.5 2,654,869 + Psest_2482 0.26 -1.1 2,654,870 - Psest_2482 0.26 -1.1 2,654,870 - Psest_2482 0.26 +0.0 2,654,870 - Psest_2482 0.26 -0.8 2,654,870 - Psest_2482 0.26 -0.2
Or see this region's nucleotide sequence