Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2479

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2478 and Psest_2479 are separated by 181 nucleotidesPsest_2479 and Psest_2480 are separated by 131 nucleotides Psest_2478: Psest_2478 - Na+/serine symporter, at 2,649,143 to 2,650,369 _2478 Psest_2479: Psest_2479 - Methyl-accepting chemotaxis protein, at 2,650,551 to 2,652,170 _2479 Psest_2480: Psest_2480 - Methyl-accepting chemotaxis protein, at 2,652,302 to 2,653,921 _2480 Position (kb) 2650 2651 2652 2653Strain fitness (log2 ratio) -2 -1 0 1 2at 2650.114 kb on - strand, within Psest_2478at 2650.114 kb on - strand, within Psest_2478at 2650.133 kb on + strand, within Psest_2478at 2650.133 kb on + strand, within Psest_2478at 2650.134 kb on - strand, within Psest_2478at 2650.134 kb on - strand, within Psest_2478at 2650.136 kb on - strand, within Psest_2478at 2650.136 kb on - strand, within Psest_2478at 2650.354 kb on + strandat 2650.355 kb on - strandat 2650.370 kb on - strandat 2650.441 kb on + strandat 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.875 kb on + strand, within Psest_2479at 2650.876 kb on - strand, within Psest_2479at 2650.876 kb on - strand, within Psest_2479at 2650.876 kb on - strand, within Psest_2479at 2650.876 kb on - strand, within Psest_2479at 2650.876 kb on - strand, within Psest_2479at 2651.067 kb on - strand, within Psest_2479at 2651.073 kb on + strand, within Psest_2479at 2651.073 kb on + strand, within Psest_2479at 2651.073 kb on + strand, within Psest_2479at 2651.073 kb on + strand, within Psest_2479at 2651.073 kb on + strand, within Psest_2479at 2651.074 kb on - strand, within Psest_2479at 2651.115 kb on + strand, within Psest_2479at 2651.115 kb on + strand, within Psest_2479at 2651.655 kb on - strand, within Psest_2479at 2651.687 kb on - strand, within Psest_2479at 2651.687 kb on - strand, within Psest_2479at 2651.703 kb on - strand, within Psest_2479at 2651.705 kb on + strand, within Psest_2479at 2651.706 kb on - strand, within Psest_2479at 2651.706 kb on - strand, within Psest_2479at 2651.778 kb on + strand, within Psest_2479at 2651.778 kb on + strand, within Psest_2479at 2651.779 kb on - strand, within Psest_2479at 2651.803 kb on + strand, within Psest_2479at 2651.844 kb on - strand, within Psest_2479at 2651.859 kb on + strand, within Psest_2479at 2651.860 kb on - strand, within Psest_2479at 2652.164 kb on + strandat 2652.164 kb on + strandat 2652.165 kb on - strandat 2652.199 kb on + strandat 2652.206 kb on - strandat 2652.227 kb on + strandat 2652.228 kb on - strandat 2652.228 kb on - strandat 2652.248 kb on + strandat 2652.293 kb on - strandat 2652.293 kb on - strandat 2652.568 kb on + strand, within Psest_2480at 2652.569 kb on - strand, within Psest_2480at 2652.569 kb on - strand, within Psest_2480at 2652.569 kb on - strand, within Psest_2480

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,650,114 - Psest_2478 0.79 +0.7
2,650,114 - Psest_2478 0.79 +0.1
2,650,133 + Psest_2478 0.81 -0.8
2,650,133 + Psest_2478 0.81 +0.5
2,650,134 - Psest_2478 0.81 -0.2
2,650,134 - Psest_2478 0.81 -0.4
2,650,136 - Psest_2478 0.81 -0.5
2,650,136 - Psest_2478 0.81 +0.2
2,650,354 + -0.6
2,650,355 - +0.6
2,650,370 - -0.9
2,650,441 + +0.7
2,650,875 + Psest_2479 0.20 +1.7
2,650,875 + Psest_2479 0.20 -0.3
2,650,875 + Psest_2479 0.20 -1.3
2,650,875 + Psest_2479 0.20 +0.9
2,650,875 + Psest_2479 0.20 +0.4
2,650,875 + Psest_2479 0.20 +0.1
2,650,875 + Psest_2479 0.20 -2.1
2,650,875 + Psest_2479 0.20 -0.6
2,650,876 - Psest_2479 0.20 +0.5
2,650,876 - Psest_2479 0.20 +2.4
2,650,876 - Psest_2479 0.20 +1.6
2,650,876 - Psest_2479 0.20 +0.2
2,650,876 - Psest_2479 0.20 +1.0
2,651,067 - Psest_2479 0.32 +1.2
2,651,073 + Psest_2479 0.32 -0.1
2,651,073 + Psest_2479 0.32 +2.2
2,651,073 + Psest_2479 0.32 +0.1
2,651,073 + Psest_2479 0.32 -0.1
2,651,073 + Psest_2479 0.32 +0.4
2,651,074 - Psest_2479 0.32 +0.7
2,651,115 + Psest_2479 0.35 -0.3
2,651,115 + Psest_2479 0.35 -0.8
2,651,655 - Psest_2479 0.68 -1.6
2,651,687 - Psest_2479 0.70 -2.5
2,651,687 - Psest_2479 0.70 -0.2
2,651,703 - Psest_2479 0.71 +0.2
2,651,705 + Psest_2479 0.71 +0.2
2,651,706 - Psest_2479 0.71 +0.0
2,651,706 - Psest_2479 0.71 -1.2
2,651,778 + Psest_2479 0.76 -1.2
2,651,778 + Psest_2479 0.76 -1.0
2,651,779 - Psest_2479 0.76 -0.5
2,651,803 + Psest_2479 0.77 +0.9
2,651,844 - Psest_2479 0.80 -0.3
2,651,859 + Psest_2479 0.81 -1.8
2,651,860 - Psest_2479 0.81 -1.8
2,652,164 + -0.6
2,652,164 + +0.1
2,652,165 - -0.8
2,652,199 + +0.1
2,652,206 - +1.1
2,652,227 + +0.2
2,652,228 - +0.8
2,652,228 - +0.2
2,652,248 + -0.1
2,652,293 - +1.2
2,652,293 - +0.2
2,652,568 + Psest_2480 0.16 -1.8
2,652,569 - Psest_2480 0.16 +1.9
2,652,569 - Psest_2480 0.16 +0.7
2,652,569 - Psest_2480 0.16 -0.3

Or see this region's nucleotide sequence