Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2420 and Psest_2421 are separated by 107 nucleotides Psest_2421 and Psest_2422 overlap by 4 nucleotides
Psest_2420: Psest_2420 - Transcriptional regulator, at 2,582,779 to 2,583,666
_2420
Psest_2421: Psest_2421 - formate dehydrogenase family accessory protein FdhD, at 2,583,774 to 2,584,577
_2421
Psest_2422: Psest_2422 - oxidoreductase alpha (molybdopterin) subunit, at 2,584,574 to 2,586,922
_2422
Position (kb)
2583
2584
2585 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2583.214 kb on + strand, within Psest_2420 at 2583.215 kb on - strand, within Psest_2420 at 2583.215 kb on - strand, within Psest_2420 at 2583.351 kb on - strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.709 kb on - strand at 2583.738 kb on + strand at 2583.738 kb on + strand at 2583.867 kb on + strand, within Psest_2421 at 2583.867 kb on + strand, within Psest_2421 at 2583.867 kb on + strand, within Psest_2421 at 2583.867 kb on + strand, within Psest_2421 at 2583.867 kb on + strand, within Psest_2421 at 2583.868 kb on - strand, within Psest_2421 at 2583.868 kb on - strand, within Psest_2421 at 2583.868 kb on - strand, within Psest_2421 at 2583.868 kb on - strand, within Psest_2421 at 2584.251 kb on + strand, within Psest_2421 at 2584.251 kb on + strand, within Psest_2421 at 2584.252 kb on - strand, within Psest_2421 at 2584.252 kb on - strand, within Psest_2421 at 2584.252 kb on - strand, within Psest_2421 at 2584.531 kb on - strand at 2584.718 kb on - strand at 2584.718 kb on - strand at 2584.910 kb on + strand, within Psest_2422 at 2585.045 kb on + strand, within Psest_2422 at 2585.045 kb on + strand, within Psest_2422 at 2585.046 kb on - strand, within Psest_2422 at 2585.046 kb on - strand, within Psest_2422 at 2585.046 kb on - strand, within Psest_2422 at 2585.046 kb on - strand, within Psest_2422 at 2585.046 kb on - strand, within Psest_2422 at 2585.046 kb on - strand, within Psest_2422 at 2585.078 kb on + strand, within Psest_2422 at 2585.079 kb on - strand, within Psest_2422 at 2585.474 kb on + strand, within Psest_2422 at 2585.474 kb on + strand, within Psest_2422 at 2585.474 kb on + strand, within Psest_2422 at 2585.474 kb on + strand, within Psest_2422 at 2585.475 kb on - strand, within Psest_2422 at 2585.570 kb on + strand, within Psest_2422 at 2585.571 kb on - strand, within Psest_2422
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,583,214 + Psest_2420 0.49 -0.3 2,583,215 - Psest_2420 0.49 +0.1 2,583,215 - Psest_2420 0.49 +0.2 2,583,351 - Psest_2420 0.64 +0.4 2,583,449 + Psest_2420 0.75 -2.1 2,583,449 + Psest_2420 0.75 -1.0 2,583,449 + Psest_2420 0.75 -0.2 2,583,449 + Psest_2420 0.75 -1.3 2,583,450 - Psest_2420 0.76 -1.4 2,583,450 - Psest_2420 0.76 -0.9 2,583,450 - Psest_2420 0.76 -0.9 2,583,450 - Psest_2420 0.76 +2.0 2,583,450 - Psest_2420 0.76 -1.1 2,583,450 - Psest_2420 0.76 -1.0 2,583,450 - Psest_2420 0.76 -1.7 2,583,709 - -0.7 2,583,738 + -0.2 2,583,738 + -0.9 2,583,867 + Psest_2421 0.12 -1.1 2,583,867 + Psest_2421 0.12 +2.0 2,583,867 + Psest_2421 0.12 -1.7 2,583,867 + Psest_2421 0.12 +2.1 2,583,867 + Psest_2421 0.12 -0.7 2,583,868 - Psest_2421 0.12 +0.6 2,583,868 - Psest_2421 0.12 +1.1 2,583,868 - Psest_2421 0.12 -0.4 2,583,868 - Psest_2421 0.12 +0.1 2,584,251 + Psest_2421 0.59 -1.1 2,584,251 + Psest_2421 0.59 -1.2 2,584,252 - Psest_2421 0.59 -0.4 2,584,252 - Psest_2421 0.59 -0.1 2,584,252 - Psest_2421 0.59 -1.0 2,584,531 - -2.0 2,584,718 - -1.3 2,584,718 - -4.4 2,584,910 + Psest_2422 0.14 -0.4 2,585,045 + Psest_2422 0.20 +0.1 2,585,045 + Psest_2422 0.20 -0.2 2,585,046 - Psest_2422 0.20 +0.3 2,585,046 - Psest_2422 0.20 -0.7 2,585,046 - Psest_2422 0.20 -1.9 2,585,046 - Psest_2422 0.20 -2.2 2,585,046 - Psest_2422 0.20 -1.8 2,585,046 - Psest_2422 0.20 +0.3 2,585,078 + Psest_2422 0.21 -0.6 2,585,079 - Psest_2422 0.21 -1.0 2,585,474 + Psest_2422 0.38 +0.6 2,585,474 + Psest_2422 0.38 -1.2 2,585,474 + Psest_2422 0.38 -2.0 2,585,474 + Psest_2422 0.38 +1.1 2,585,475 - Psest_2422 0.38 +1.1 2,585,570 + Psest_2422 0.42 -1.2 2,585,571 - Psest_2422 0.42 -0.0
Or see this region's nucleotide sequence